Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS321A05f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces p... 28 0.73
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|... 28 0.97
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 27 1.7
SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1 |S... 27 2.2
SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter Zhf1|Schizosacc... 27 2.2
SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase Hat1|Schi... 26 3.0
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 25 5.2
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar... 25 5.2
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 25 9.0
SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc... 25 9.0
>SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 612
Score = 28.3 bits (60), Expect = 0.73
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +3
Query: 42 TKMLRSIYKVSGTVKNISTKVKFPEKFKGTIIEKWADYWKNLFID 176
T + YK++ + N + P KF IE W+ K+LF+D
Sbjct: 463 TTLADPCYKLAESWTNSAKNSDDPSKFSSKDIENWSAGQKSLFLD 507
>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
Alp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 27.9 bits (59), Expect = 0.97
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +3
Query: 375 EHLRFLDTCYNQEVIHYRSLGILSVMYTSELSNSCDLYRAH-CTYTKPTY 521
EH+ FLDTC + ++ + +L V S+L N+C ++ ++ T+T+ Y
Sbjct: 680 EHIDFLDTCLKECML--TNSRLLKVQ--SKLLNTCAMFASYTSTFTRSLY 725
>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1462
Score = 27.1 bits (57), Expect = 1.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 132 IIEKWADYWKNLFIDYRQMLQDL 200
+I+ W W NLFI Y ++ DL
Sbjct: 1418 LIKTWNTTWNNLFIYYPELSNDL 1440
>SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 445
Score = 26.6 bits (56), Expect = 2.2
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 240 WTTGIITFYLLSRNNPTECD 299
W+ G+I F LLS N+P+ D
Sbjct: 354 WSLGVIMFLLLSGNSPSFAD 373
>SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter
Zhf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 26.6 bits (56), Expect = 2.2
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -2
Query: 349 SLTSPTSLFIIFKLSLKSHSVGLFL 275
S+++PT +F + L L S+ VG+FL
Sbjct: 108 SVSNPTLMFFVGSLGLLSNFVGIFL 132
>SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase
Hat1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 26.2 bits (55), Expect = 3.0
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 123 KGTIIEKWADYWKNLFIDYRQMLQDLRSDIQDDPMKAMK 239
K IEK + ++N F +Y+Q+++ L +D P K K
Sbjct: 334 KSERIEKIHNAYENQFDEYKQIVKKLPKLKEDSPRKRQK 372
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2685
Score = 25.4 bits (53), Expect = 5.2
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -3
Query: 315 SSCL*NRILLDYFLIIDKRL*CQLSTSWLSLDHLVYHSLNLATFVD 178
SSC+ I L + ID+R Q T +L L Y+SL+ + D
Sbjct: 199 SSCVICSIRLANLVYIDRRQSSQQITDYLDLSLQTYYSLDKSNVPD 244
>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
Nup107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 794
Score = 25.4 bits (53), Expect = 5.2
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -2
Query: 496 WALYRSQELLNSEVYITDKIPK 431
WA Y S N +VY++ K P+
Sbjct: 335 WAYYNSMTQYNLDVYLSSKAPQ 356
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 150 DYWKNLFIDYRQMLQDLRSDIQDDPMKAMKW 242
DYWK+L+I + L +S + +K +KW
Sbjct: 561 DYWKSLYILLNENLFVGQSSFKSVFLKWLKW 591
>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
Sen2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 380
Score = 24.6 bits (51), Expect = 9.0
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = +3
Query: 195 DLRSDIQDDPMKAMKWTTGIITFYLLSRNNPT-ECDFKDNLKIINNEVGLVSEECLNPKA 371
DL + D WT+G LSR+ PT K +L ++ + LV+EE +
Sbjct: 57 DLSCVVTDSEAIKKFWTSGFFGKGNLSRSEPTWHTRTKRSLGLLGFDEDLVAEEVTARRR 116
Query: 372 VEHLRF 389
+ +F
Sbjct: 117 FQRKQF 122
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,295,438
Number of Sequences: 5004
Number of extensions: 48339
Number of successful extensions: 129
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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