Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS321A05f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0069 + 536787-537068,537193-537493,537528-537581,538848-53...    30   1.3  
01_03_0284 - 14595643-14595663,14595978-14596018,14596379-145967...    28   4.0  
03_06_0678 - 35480711-35484658                                         28   5.2  
05_03_0460 - 14294931-14295110,14295200-14295234,14295358-142954...    27   6.9  
01_06_1057 - 34142979-34143114,34143212-34143390,34143496-341436...    27   6.9  

>01_01_0069 +
           536787-537068,537193-537493,537528-537581,538848-539241,
           539345-539595,539678-539798,539893-540133,540341-540445,
           540571-540615,540738-540890,541132-541410,541705-541841,
           541975-542017,542228-542329
          Length = 835

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = +3

Query: 102 VKFPEKFKGTIIEKWADYWKNLFIDYRQMLQDLR 203
           VKF ++F+G ++ +W    K+ F+DY  + +DL+
Sbjct: 2   VKFSKQFEGQLVPEW----KHAFVDYSLLKKDLK 31


>01_03_0284 -
           14595643-14595663,14595978-14596018,14596379-14596732,
           14597023-14597494,14597524-14600001
          Length = 1121

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 357 LNPKAVEHLRFLDTCYNQEVIHY-RSLGILSVMYTSELS 470
           + PK + HLR+L+  Y+Q ++     + IL  + T +LS
Sbjct: 591 IQPKHLHHLRYLNLTYSQNMVRLPEEISILYNLQTLDLS 629


>03_06_0678 - 35480711-35484658
          Length = 1315

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +3

Query: 357 LNPKAVEHLRFLDTCYNQEVIHYRSLGILSVMYTSELSNSCD 482
           L PK + HLR+LD  Y++       + IL  + T  LS  CD
Sbjct: 590 LKPKYLHHLRYLDLSYSKIEALPEDISILYHLQTLNLS-ICD 630


>05_03_0460 -
           14294931-14295110,14295200-14295234,14295358-14295457,
           14295548-14295669,14296272-14296367,14296489-14298949
          Length = 997

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +1

Query: 100 K*NSQKNLKEQLLKNGLITGR-TYLLIIDKCCKI*GVIYKMI 222
           K +  + + E++L+ GL     TY L+ID CCK  G I K I
Sbjct: 630 KLDEAQKIMEEMLEKGLFPSVVTYNLMIDVCCKT-GRIEKAI 670


>01_06_1057 -
           34142979-34143114,34143212-34143390,34143496-34143669,
           34143757-34144005,34144108-34144233,34144341-34144565,
           34144657-34144747,34144837-34144951,34145312-34145366
          Length = 449

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/52 (23%), Positives = 27/52 (51%)
 Frame = +3

Query: 180 RQMLQDLRSDIQDDPMKAMKWTTGIITFYLLSRNNPTECDFKDNLKIINNEV 335
           R++++D+     D+ +  + +   I  FY ++ N    CD+ D    IN+++
Sbjct: 172 REVIEDIDKLDGDNELAVVDYIEDIYKFYKVAENECRPCDYIDTQVEINSKM 223


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,313,228
Number of Sequences: 37544
Number of extensions: 257201
Number of successful extensions: 619
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)