Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS321A04f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr 2|...    50   2e-07
SPCC1840.11 |csl4|SPCC965.01|exosome subunit Csl4|Schizosaccharo...    25   9.0  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    25   9.0  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    25   9.0  

>SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 209

 Score = 50.0 bits (114), Expect = 2e-07
 Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 3/115 (2%)
 Frame = +3

Query: 186 AEQILSKIPPHDDX-LTYSHGNYLFHYIAENKLVYFCITDDKFQRSRAFLFLNEIKRR-- 356
           A+ IL ++ P  +   +   G+Y FHY+ +N + Y CI +  + R  AF +L E+     
Sbjct: 29  AKLILKRLSPTSEKRASIESGDYTFHYLIDNGICYLCICEQSYPRKLAFSYLEELAGEFW 88

Query: 357 XXXXXXXXXXXXIPYAMNSEFGRVLATEMKHYSESRDLDNISRVHGELDELKNIM 521
                        PYA   +F   +    + Y+  R  DN+ +++ EL ++  +M
Sbjct: 89  NSFGEEALQPGLRPYAF-VQFDTFMQKSKRVYNTPRANDNLDKLNTELKDVTRVM 142


>SPCC1840.11 |csl4|SPCC965.01|exosome subunit
           Csl4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 181

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 130 LATILNNIGIVNNRVNDTKNTMLPNHYLHTHT 35
           L T  N++G++  + ++T   M P  Y H  T
Sbjct: 133 LTTARNDLGVIFAQSSETGEQMFPVDYQHMQT 164


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1334

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 368  CCSESSFYLIKK*ERSRTLEFIVSDAEINQFVLCY 264
            C S+ +FY+ +   RSR   F+V +     F L Y
Sbjct: 1219 CYSQFAFYVNRDGWRSRPTWFVVWEGSPQNFALSY 1253


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -3

Query: 459 IHCNVSSQWQEPDQIHCSWRKVLLSV 382
           IHC +S  W    +   +W K+L+++
Sbjct: 83  IHCTISQSWDCLVEHGATWAKLLIAL 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,156,097
Number of Sequences: 5004
Number of extensions: 42206
Number of successful extensions: 114
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)