Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS321A04f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0303 - 3337454-3337544,3338358-3338521,3338624-3338805,333... 99 2e-21
06_01_0521 - 3773749-3773931,3774295-3774485,3775115-3775334 97 1e-20
02_05_1125 + 34282559-34282796,34283247-34283437,34283540-342836... 76 2e-14
03_06_0347 + 33293915-33294104,33295143-33295284,33295365-332954... 73 1e-13
07_01_0680 + 5128023-5128212,5128629-5128667,5129496-5129637,512... 63 2e-10
03_01_0459 + 3533718-3533916,3535009-3535150,3535290-3535410,353... 63 2e-10
12_02_1272 + 27475302-27475491,27476792-27476876,27477076-274771... 58 3e-09
07_01_0987 + 8320205-8320472,8321549-8321690,8321773-8321893,832... 55 4e-08
01_01_0945 - 7439776-7440026,7440109-7440269,7440824-7441011 48 5e-06
01_05_0508 - 22804809-22805231,22805775-22806797 38 0.004
04_04_0232 + 23794109-23794399,23795290-23796621 29 2.3
10_08_1005 - 22179407-22180122,22180210-22180653,22180737-221808... 28 4.0
11_05_0010 - 18356835-18357080,18357475-18357672,18357780-183580... 28 5.2
09_02_0302 - 7086017-7086124,7086125-7086796,7087511-7088070,708... 27 6.9
09_04_0712 + 19670279-19670570,19670676-19670767,19671360-196714... 27 9.1
01_05_0346 + 21191542-21191783,21191988-21192072,21192159-211924... 27 9.1
>10_01_0303 -
3337454-3337544,3338358-3338521,3338624-3338805,
3339088-3339322
Length = 223
Score = 98.7 bits (235), Expect = 2e-21
Identities = 50/140 (35%), Positives = 81/140 (57%), Gaps = 7/140 (5%)
Frame = +3
Query: 102 MPILFSIVARGTVVLAKYATCQGNFTEVAEQILSKIPPH-DDXLTYSHGNYLFHYI---- 266
M I++++VARGTVVLA+++ GN VA +IL K+PP + L ++ Y+FH +
Sbjct: 1 MAIVYAVVARGTVVLAEFSAVSGNAGAVARRILEKLPPDAESRLCFAQDRYIFHVLRSPP 60
Query: 267 --AENKLVYFCITDDKFQRSRAFLFLNEIKRRXXXXXXXXXXXXIPYAMNSEFGRVLATE 440
A + L + C+ +D F R FL+L +I+ R + YAMN EF RVL +
Sbjct: 61 PAAADGLTFLCMANDTFGRRIPFLYLEDIQMRFIKNYGRIAHNALAYAMNDEFSRVLHQQ 120
Query: 441 MKHYSESRDLDNISRVHGEL 500
M+++S + D ++R+ GE+
Sbjct: 121 MEYFSSNPSADTLNRLRGEI 140
>06_01_0521 - 3773749-3773931,3774295-3774485,3775115-3775334
Length = 197
Score = 96.7 bits (230), Expect = 1e-20
Identities = 48/142 (33%), Positives = 78/142 (54%), Gaps = 2/142 (1%)
Frame = +3
Query: 102 MPILFSIVARGTVVLAKYATCQGNFTEVAEQILSKIPPH--DDXLTYSHGNYLFHYIAEN 275
M IL+++VARGTVVLA+++ N VA Q+L ++P D ++Y+ Y+FH +
Sbjct: 1 MAILYAVVARGTVVLAEHSAAATNAGAVARQVLERLPGGGADSHVSYTQDRYVFHAKRTD 60
Query: 276 KLVYFCITDDKFQRSRAFLFLNEIKRRXXXXXXXXXXXXIPYAMNSEFGRVLATEMKHYS 455
+ C+ D+ R F FL +I R + Y MN EF RVL+ +M +YS
Sbjct: 61 GITALCMADEAAGRRIPFAFLEDIHGRFVKTYGRAALTSLAYGMNDEFSRVLSQQMDYYS 120
Query: 456 ESRDLDNISRVHGELDELKNIM 521
+ D I+R+ GE+ +++ +M
Sbjct: 121 NDPNADRINRMRGEISQVRTVM 142
>02_05_1125 +
34282559-34282796,34283247-34283437,34283540-34283629,
34283630-34283793,34284139-34284352
Length = 298
Score = 76.2 bits (179), Expect = 2e-14
Identities = 46/140 (32%), Positives = 69/140 (49%), Gaps = 7/140 (5%)
Frame = +3
Query: 108 ILFSIVARGTVVLAKYATCQ-GNFTEVAEQILSKIPPHDDX------LTYSHGNYLFHYI 266
I ++ VARG VV+A++ N VA QIL ++ D ++Y+ ++FH
Sbjct: 4 IQYAAVARGAVVMAEHGDAAFPNAGAVARQILDRLSAGDGGGGGDCNISYTQDLHVFHVK 63
Query: 267 AENKLVYFCITDDKFQRSRAFLFLNEIKRRXXXXXXXXXXXXIPYAMNSEFGRVLATEMK 446
+ + C+ DD R F FL +I R + YAMN EF RVL +M
Sbjct: 64 RTDGVTALCMADDAAGRRIPFAFLEDIHGRFVKTYGRAALTALAYAMNDEFSRVLGQQMD 123
Query: 447 HYSESRDLDNISRVHGELDE 506
+YS + D ISR+ GE+D+
Sbjct: 124 YYSNDPNADRISRMRGEMDQ 143
>03_06_0347 +
33293915-33294104,33295143-33295284,33295365-33295485,
33295590-33295652,33296524-33296553,33297411-33297905
Length = 346
Score = 72.9 bits (171), Expect = 1e-13
Identities = 37/140 (26%), Positives = 70/140 (50%), Gaps = 2/140 (1%)
Frame = +3
Query: 108 ILFSIVARGTVVLAKYATCQGNFTEVAEQILSKIPPHDDXLTYSHGNYLFHYIAENKLVY 287
++++ VARGTV+LA+Y GNFT +A Q L K+P ++ TY+ + F+Y+ E+ Y
Sbjct: 6 LIYAFVARGTVILAEYTEFTGNFTTIASQCLMKLPASNNKFTYNCDGHTFNYLVEDGFTY 65
Query: 288 FCITDDKFQRSRAFLFLNEIKRR-XXXXXXXXXXXXIPYAMNSEFGRVLATEMKH-YSES 461
+ + R FL+ +K ++N +FG L M++
Sbjct: 66 CVVAVESVGRQIPIAFLDRVKDDFTKRYAGGKAATAAANSLNRDFGSKLKEHMQYCVDHP 125
Query: 462 RDLDNISRVHGELDELKNIM 521
++ +++V ++ E+K +M
Sbjct: 126 EEISKLAKVKAQVSEVKGVM 145
>07_01_0680 +
5128023-5128212,5128629-5128667,5129496-5129637,
5129727-5129847,5129951-5130013,5130114-5130203,
5130572-5130619,5131114-5131260
Length = 279
Score = 62.9 bits (146), Expect = 2e-10
Identities = 40/153 (26%), Positives = 71/153 (46%), Gaps = 15/153 (9%)
Frame = +3
Query: 108 ILFSIVARGTVVLAKYATCQGNFTEVAEQILSKIPPHDDXLTYSHGNYLFHYIAEN---- 275
++++ VARGTVVLA+Y GNFT +A Q L K+P ++ TY+ + F+Y+ E+
Sbjct: 6 LIYAFVARGTVVLAEYTEFTGNFTTIAAQCLQKLPASNNKFTYNCDGHTFNYLVEDGFSS 65
Query: 276 ---------KLVYFCITDDKFQRSRAFLFLNEIKRR-XXXXXXXXXXXXIPYAMNSEFGR 425
L Y + + R FL+ +K ++N EFG
Sbjct: 66 NRIGILGIQGLAYCVVAVESVGRQIPIAFLDRVKEDFTKRYGGGKAATAAANSLNREFGS 125
Query: 426 VLATEMKH-YSESRDLDNISRVHGELDELKNIM 521
L M++ ++ +++V ++ E+K +M
Sbjct: 126 KLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVM 158
>03_01_0459 +
3533718-3533916,3535009-3535150,3535290-3535410,
3535513-3535575,3535677-3535823
Length = 223
Score = 62.9 bits (146), Expect = 2e-10
Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 2/140 (1%)
Frame = +3
Query: 108 ILFSIVARGTVVLAKYATCQGNFTEVAEQILSKIPPHDDXLTYSHGNYLFHYIAENKLVY 287
+++S VARG VVLA +A GNF VA Q L K+P ++ +Y+ + F+Y + Y
Sbjct: 9 LVYSFVARGAVVLADHAEVSGNFASVAAQCLQKLPSTNNRHSYNCDGHTFNYHVHDGFTY 68
Query: 288 FCITDDKFQRSRAFLFLNEIKRR-XXXXXXXXXXXXIPYAMNSEFGRVLATEMKHY-SES 461
+ + R F+ +K ++ E+G L MK+ +
Sbjct: 69 CVVATESAGRQLPVGFIERVKEDFSKKYSGGKAKNATANSLKREYGPKLKEHMKYCDAHP 128
Query: 462 RDLDNISRVHGELDELKNIM 521
++D +++V ++ E+K +M
Sbjct: 129 EEIDKLAKVKAQVTEVKGVM 148
>12_02_1272 +
27475302-27475491,27476792-27476876,27477076-27477196,
27477443-27477586
Length = 179
Score = 58.4 bits (135), Expect = 3e-09
Identities = 27/81 (33%), Positives = 46/81 (56%)
Frame = +3
Query: 108 ILFSIVARGTVVLAKYATCQGNFTEVAEQILSKIPPHDDXLTYSHGNYLFHYIAENKLVY 287
+++++VARGTVVLA++ GNF ++A Q L K+P D+ LTY+ + F+++ Y
Sbjct: 6 LIYAMVARGTVVLAEHTAYAGNFRDIAAQCLQKLPAGDNRLTYTCDAHTFNFLIHQGYAY 65
Query: 288 FCITDDKFQRSRAFLFLNEIK 350
+ + R L+ IK
Sbjct: 66 CVVATESSGRQIPLALLDMIK 86
>07_01_0987 +
8320205-8320472,8321549-8321690,8321773-8321893,
8322190-8322264,8322784-8322846,8322934-8323086
Length = 273
Score = 54.8 bits (126), Expect = 4e-08
Identities = 34/149 (22%), Positives = 68/149 (45%), Gaps = 11/149 (7%)
Frame = +3
Query: 108 ILFSIVARGTVVLAKYATCQGNFTEVAEQILSKIPPHDD---------XLTYSHGNYLFH 260
++++ VARGT VLA+Y GNF +A Q L ++P +Y+ + F+
Sbjct: 23 LIYAFVARGTAVLAEYTEFTGNFPALAAQCLQRLPASGGGGSGGGAPARFSYACDGHTFN 82
Query: 261 YIAENKLVYFCITDDKFQRSRAFLFLNEIKRR-XXXXXXXXXXXXIPYAMNSEFGRVLAT 437
++ Y + + ++ + FL +K + ++N E+G V+
Sbjct: 83 FLLHRGYAYCVVAKESVPKNVSVAFLERLKDDFMKRYGGGKADTALAKSLNKEYGPVIKQ 142
Query: 438 EMKH-YSESRDLDNISRVHGELDELKNIM 521
M++ S +++ +V ++ E+KNIM
Sbjct: 143 HMQYVLDHSEEIEKTLKVQAQVSEVKNIM 171
>01_01_0945 - 7439776-7440026,7440109-7440269,7440824-7441011
Length = 199
Score = 48.0 bits (109), Expect = 5e-06
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 1/109 (0%)
Frame = +3
Query: 198 LSKIPPHDDXLTYSHGNYLFHYIAENKLVYFCITDDKFQRSRAFLFLNEIKRRXXXXXXX 377
LSK ++ G YLFHYI E ++ Y + D + + AF +L ++K
Sbjct: 43 LSKGQHEASRMSIETGPYLFHYIIEGRVCYLTMCDCSYPKKLAFQYLEDLKNEFERVNGN 102
Query: 378 XXXXXI-PYAMNSEFGRVLATEMKHYSESRDLDNISRVHGELDELKNIM 521
PYA +F + K Y ++R N+++++ EL E+ IM
Sbjct: 103 QIETAARPYAF-IKFDTFIQKTKKLYLDTRTQRNLAKLNDELYEVHQIM 150
>01_05_0508 - 22804809-22805231,22805775-22806797
Length = 481
Score = 38.3 bits (85), Expect = 0.004
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +3
Query: 78 VSFTRLFTMPILFSIVARGTVVLAKYATCQGNFTEVA--EQILSKIPPHDDXLTYSHGNY 251
VSF R F +P+L ++ G + A+C N T VA ++I + IP H + Y + Y
Sbjct: 311 VSFIRSFNLPLL--LLGGGGYTINHVASCWCNETAVAIGKEIPNDIPKHGFDVFYKNQEY 368
Query: 252 LFHYIAENK 278
HY E K
Sbjct: 369 KLHYKLETK 377
>04_04_0232 + 23794109-23794399,23795290-23796621
Length = 540
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 25 T*RRCACVNSDLVT-LCSLCRLRDYSQCLYYSVSWLEAL 138
T RR A +++ LV+ + LC LR Y+ C SW AL
Sbjct: 105 THRRWADLHAGLVSRVADLCALRGYASCRAVCASWRAAL 143
>10_08_1005 - 22179407-22180122,22180210-22180653,22180737-22180861,
22180939-22181169,22181250-22181805,22181896-22182312,
22182405-22183216,22183653-22183738,22184464-22184534,
22184553-22185573,22186018-22186062,22186252-22186326,
22186797-22186871
Length = 1557
Score = 28.3 bits (60), Expect = 4.0
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +3
Query: 96 FTMPILFSIVARGTVVLAKYATCQGNFTEVAEQILSKIP-PHDDXLTYSHGNYL 254
F +P SI R KY+TC ++ + LSKIP P D + Y+
Sbjct: 1395 FVLPDSSSIYKRQKTSEGKYSTCSFGDGQLTSKCLSKIPLPADQHTSLDDVQYI 1448
>11_05_0010 - 18356835-18357080,18357475-18357672,18357780-18358046,
18358870-18359067,18359151-18359417,18359524-18359724,
18359807-18361363,18361499-18361859,18362602-18363467
Length = 1386
Score = 27.9 bits (59), Expect = 5.2
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +3
Query: 57 FGNIVFFVSFTRLFTMPILFSIVARGTVVLAKYATCQGNFTEVAEQILSKIPPH 218
FG + ++ P L +I +G VVLAK C G E + + +PPH
Sbjct: 1058 FGRAGWCFDAIGIYVNPDLQTIKDKGKVVLAKIGPCGGKGGEACDIM---VPPH 1108
>09_02_0302 -
7086017-7086124,7086125-7086796,7087511-7088070,
7088754-7089131,7089357-7089821,7090022-7090127,
7090219-7090294,7090407-7090648,7090824-7090904,
7091013-7091205,7091336-7091558,7091611-7091646,
7091694-7091790
Length = 1078
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 498 ILHELLKCCPSLEIHCNVSSQ 436
I+ +L+K CP E CN S Q
Sbjct: 708 IIDQLIKLCPGCESSCNASGQ 728
>09_04_0712 +
19670279-19670570,19670676-19670767,19671360-19671487,
19671615-19671750,19671838-19671889,19671994-19672094,
19672577-19672753,19673370-19673527,19674002-19674107,
19674636-19674806
Length = 470
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -3
Query: 516 YFLIHLILHELLKCCPSL-EIHCNVSSQWQEPDQIHCSWRK 397
+F+ ++H+LL CPS+ E+ N +W++ + WRK
Sbjct: 257 FFVSRWVMHQLLVECPSIYEMLPNPHFKWKKAPVVQV-WRK 296
>01_05_0346 +
21191542-21191783,21191988-21192072,21192159-21192422,
21192518-21192820,21193695-21193799,21193916-21194020,
21194613-21194712,21195614-21195933,21196183-21196359,
21196432-21196560,21196592-21196636,21196851-21197078
Length = 700
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Frame = +3
Query: 396 PYAMNSEFGRVLATE-----MKHYSESRDLDNISRVHGELDE 506
P A + F VL T+ ++HY E+R D +S+V G + E
Sbjct: 75 PVAALTRFEDVLQTQDCNIILRHYGETRRWDELSKVFGWMQE 116
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,889,973
Number of Sequences: 37544
Number of extensions: 236201
Number of successful extensions: 530
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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