Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS321A03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    29   0.42 
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   3.0  
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   3.9  
SPBC21H7.02 |taf10||transcription factor TFIID complex subunit T...    25   9.0  

>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 350

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 20/58 (34%), Positives = 31/58 (53%)
 Frame = +2

Query: 191 MTTPIMTSNQSASRTPSNRNTRGWRLATIPSLNLKWSRSPVMQQSTKRLSSPQLHSII 364
           M+TP   SN S SRTPS++    W    I  L+ + + SP +     +  SP +HS++
Sbjct: 279 MSTP--NSNHSRSRTPSSKKRTRWG-EEIIDLSKRRAVSPSIYYDLDKKCSP-IHSVM 332


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 20/75 (26%), Positives = 31/75 (41%)
 Frame = +2

Query: 194  TTPIMTSNQSASRTPSNRNTRGWRLATIPSLNLKWSRSPVMQQSTKRLSSPQLHSIIRPR 373
            +TPI +S    S TP   +T       I S ++  S +P+   +    S+P   S +   
Sbjct: 2505 STPITSSTVVNSSTPITSSTVLNSSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNS 2564

Query: 374  RHPTTSLQPRRAINP 418
              P TSL    +  P
Sbjct: 2565 STPITSLTALNSSTP 2579


>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 230

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = +1

Query: 346 STSFDNPPSTSSDNQPATSSGNQPSS 423
           S+S  +  STS D+QP+TSS + PSS
Sbjct: 56  SSSSSSSISTSHDSQPSTSS-SSPSS 80



 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 346 STSFDNPPSTSSDNQPATSSGN 411
           STS D+ PSTSS +  +TS+ +
Sbjct: 64  STSHDSQPSTSSSSPSSTSTSS 85



 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 340 QPSTSFDNPPSTSSDNQPATS 402
           QPSTS  +P STS+ +   TS
Sbjct: 70  QPSTSSSSPSSTSTSSSSGTS 90


>SPBC21H7.02 |taf10||transcription factor TFIID complex subunit
           Taf10 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +1

Query: 328 EEIVQPSTS-FDNPPSTSSDNQPATSSGNQPS 420
           E I QP     D   S S D QP TSS N P+
Sbjct: 11  ENIEQPKQEPEDGNNSMSVDEQPETSSTNLPT 42


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,921,532
Number of Sequences: 5004
Number of extensions: 34706
Number of successful extensions: 126
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)