Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS321A03f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003385-4|AAB54244.1|  333|Caenorhabditis elegans Hypothetical ...    28   4.7  
Z99277-6|CAB16484.1|  677|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z82089-5|CAD91717.1| 4541|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z81499-7|CAD91628.1| 4541|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z81039-2|CAB02774.1| 2150|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U64848-6|AAB04885.1|  208|Caenorhabditis elegans Hypothetical pr...    27   8.1  
M85149-1|AAA28144.1| 2150|Caenorhabditis elegans zinc finger pro...    27   8.1  

>AF003385-4|AAB54244.1|  333|Caenorhabditis elegans Hypothetical
           protein R08F11.2 protein.
          Length = 333

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 86  LIQLSKKIRSR*LCAPCRTEICVNCAAGTRCRLPMMTTPIMTSNQ 220
           L++L+K   +  L   CRT I +  A G  C   + T PI+ S++
Sbjct: 134 LLELAKPTLAAFLFEGCRTYIFMGFAIGYGCYFAIFTPPIVFSSK 178


>Z99277-6|CAB16484.1|  677|Caenorhabditis elegans Hypothetical
           protein Y53C12A.1 protein.
          Length = 677

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = +2

Query: 179 RLPMMT--TPIMTSNQSASRTPSNRNTRGWRLATIPSLNLKWSRSPVMQQSTKRLSSPQL 352
           ++PMM   TP+ T  +  + TP  R      + T+P     WS   V ++S   L +PQ 
Sbjct: 30  QIPMMMRETPLSTKRERQAITPRFRRPAPKMIKTMPPTRSIWS---VRKESVPLLVTPQG 86

Query: 353 HSIIRPRRHPTTSLQ 397
              +   ++  T+ Q
Sbjct: 87  PKPLESPKYDHTNAQ 101


>Z82089-5|CAD91717.1| 4541|Caenorhabditis elegans Hypothetical
           protein ZK270.2e protein.
          Length = 4541

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = +2

Query: 320 QSTKRLSSPQLHSIIRP--RRHPTTSLQPR 403
           +ST+ L S Q+ +   P  ++HPTTS QPR
Sbjct: 2   ESTETLGSEQMGTDRDPGDQKHPTTSQQPR 31


>Z81499-7|CAD91628.1| 4541|Caenorhabditis elegans Hypothetical
           protein ZK270.2e protein.
          Length = 4541

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = +2

Query: 320 QSTKRLSSPQLHSIIRP--RRHPTTSLQPR 403
           +ST+ L S Q+ +   P  ++HPTTS QPR
Sbjct: 2   ESTETLGSEQMGTDRDPGDQKHPTTSQQPR 31


>Z81039-2|CAB02774.1| 2150|Caenorhabditis elegans Hypothetical
           protein C25D7.3 protein.
          Length = 2150

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = +1

Query: 322 VHEEIVQPSTSFDNPPST--SSDNQPAT 399
           V EE+  P TSF  PPS    S  +PAT
Sbjct: 178 VREELKDPETSFSKPPSVVHHSKIRPAT 205


>U64848-6|AAB04885.1|  208|Caenorhabditis elegans Hypothetical
           protein C50E3.10 protein.
          Length = 208

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +2

Query: 143 EICVNCAAGTRCRLPMM 193
           E C NC +GT C  PMM
Sbjct: 184 EACSNCPSGTSCTDPMM 200


>M85149-1|AAA28144.1| 2150|Caenorhabditis elegans zinc finger
           protein protein.
          Length = 2150

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = +1

Query: 322 VHEEIVQPSTSFDNPPST--SSDNQPAT 399
           V EE+  P TSF  PPS    S  +PAT
Sbjct: 178 VREELKDPETSFSKPPSVVHHSKIRPAT 205


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,799,818
Number of Sequences: 27780
Number of extensions: 203927
Number of successful extensions: 749
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)