Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS321A02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21H7.06c |||inositol metabolism protein Opi10 |Schizosacchar...    27   1.3  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    27   1.7  
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    26   3.9  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    25   5.2  
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo...    25   6.8  
SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr 1|||...    25   6.8  
SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr 2|...    25   6.8  
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc...    25   9.0  
SPBC29A10.06c |||conserved fungal protein|Schizosaccharomyces po...    25   9.0  

>SPBC21H7.06c |||inositol metabolism protein Opi10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 200

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = +3

Query: 201 NPNCSVKTEVLCDRSEPTVEITLLPAIAATA-KIQKVTLRSENLTCLEILQLLNKHISSL 377
           N NC   T +L    EP    T  PA++ +A  +    L        +IL  L   ++S 
Sbjct: 90  NENCVGITAMLGISVEPLTNFTETPAVSTSASNVIAKPLPPVTSVAQKILTNLYNFLASF 149

Query: 378 APVELPP 398
           A  +LPP
Sbjct: 150 ATSQLPP 156


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +3

Query: 75  QLKAVNLKAAKKITIKFDPFGENATHTRNFAHYISAPKIAITNPNCSVKTE 227
           +L  ++L  A  IT+K +P   +A  T +F  ++S P   I + N + K E
Sbjct: 700 KLCKLDLAKANSITLKSEP--SSAVSTHSFEVHLSMPGTQIKSANLAEKME 748


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -1

Query: 230 HFGLHRAIGICDCYFRCTDVMSKI 159
           HF     I IC CY+R  D  S I
Sbjct: 585 HFSFRSQILICWCYYRLNDFKSLI 608


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1428

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -1

Query: 242  PVTQHFGLHRAIGICDCYFRCTDVMSKIPCVSCVFSKWIKFYGNFFSS 99
            PV  + G    +G   C+++C D  S I  +  + S + K   N FS+
Sbjct: 1114 PVDANLGKILVLG---CFYKCVDAASSIVAMLTIGSPFRKSVDNEFSA 1158


>SPBC244.02c |||U3 snoRNP-associated protein Utp6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 488

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 19/61 (31%), Positives = 31/61 (50%)
 Frame = -1

Query: 368 NVLIQ*LENFKTSKILTS*SHFLYFCSCCNCRQECYFYCWLTPVTQHFGLHRAIGICDCY 189
           NVL+Q + N +  K L+  ++  +F S      +  F C+  PV Q+      IGIC+ +
Sbjct: 274 NVLLQIILNSR--KNLSLQNYVGFFVSVL----DALFECFDVPVVQYMYQENIIGICNEH 327

Query: 188 F 186
           F
Sbjct: 328 F 328


>SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 356

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = +3

Query: 261 ITLLPAIAATAKI---QKVTLRSENLTCLEILQLLNKHISSLA 380
           I  +PAI A A I   Q   + SENLT  ++L+L    ++ +A
Sbjct: 71  IEAVPAIKAIANINGVQVTNMGSENLTPADVLKLAKLILAEVA 113


>SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = +3

Query: 261 ITLLPAIAATAKI---QKVTLRSENLTCLEILQLLNKHISSLA 380
           I  +PAI A A I   Q   + SENLT  ++L+L    ++ +A
Sbjct: 71  IEAVPAIKAIANINGVQVTNMGSENLTPADVLKLAKLILAEVA 113


>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -2

Query: 511 WYLTIYFFNDI*VSFRFCHLCFYFVF 434
           W + I ++  + VSF +C + F+ +F
Sbjct: 136 WVIRILYYIYVAVSFIYCVMAFFTIF 161


>SPBC29A10.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 295

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +3

Query: 189 IAITNPNCSVKTEVLCDRSEPTVEITLLPAIAATAKIQKVTLRSENLTCLE 341
           + ++   C V   +L  + EP    TLL  +  +  IQ+    S N T L+
Sbjct: 229 LPLSQEECEVLFSLLRSKKEPLYLNTLLALLVESNNIQEALELSSNSTHLQ 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,943,534
Number of Sequences: 5004
Number of extensions: 36365
Number of successful extensions: 102
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)