Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS321A02f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0871 - 7230228-7230338,7231055-7231348,7231972-7232148,723...    24   3.4  
11_08_0029 - 27783907-27784310,27784418-27786616,27786751-27787333     28   4.0  
11_08_0014 - 27631971-27632374,27632486-27635402                       28   5.2  
11_08_0033 + 27820563-27823482,27823593-27823996                       27   6.9  
08_02_0099 + 12343518-12343678,12344193-12344393,12344669-123448...    27   9.1  

>07_01_0871 -
           7230228-7230338,7231055-7231348,7231972-7232148,
           7232513-7232551,7232734-7234057,7238145-7238189,
           7238456-7238498,7238680-7238716,7239035-7239325,
           7239634-7239685,7239690-7239773,7240064-7240137,
           7240703-7241641
          Length = 1169

 Score = 24.2 bits (50), Expect(2) = 3.4
 Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
 Frame = -1

Query: 197 DCYFRCTDVMSKIPCVS-CVFSK 132
           DCY    DV  K+PC S C+  K
Sbjct: 375 DCYGYIVDVGRKVPCSSGCICYK 397



 Score = 22.6 bits (46), Expect(2) = 3.4
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -1

Query: 293 CSCCNCRQECYFY 255
           C CC+   +CY Y
Sbjct: 367 CKCCSVAGDCYGY 379


>11_08_0029 - 27783907-27784310,27784418-27786616,27786751-27787333
          Length = 1061

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/23 (60%), Positives = 14/23 (60%)
 Frame = +3

Query: 324 NLTCLEILQLLNKHISSLAPVEL 392
           NLT LEIL L   HIS   P EL
Sbjct: 155 NLTKLEILNLYGNHISGHIPAEL 177


>11_08_0014 - 27631971-27632374,27632486-27635402
          Length = 1106

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 15/23 (65%), Positives = 15/23 (65%)
 Frame = +3

Query: 324 NLTCLEILQLLNKHISSLAPVEL 392
           NLT LEIL L   HIS   PVEL
Sbjct: 156 NLTRLEILSLGYNHISGHIPVEL 178


>11_08_0033 + 27820563-27823482,27823593-27823996
          Length = 1107

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +3

Query: 324 NLTCLEILQLLNKHISSLAPVEL 392
           NLT LE L L + HIS   P+EL
Sbjct: 152 NLTKLETLNLYDNHISGHVPMEL 174


>08_02_0099 +
           12343518-12343678,12344193-12344393,12344669-12344846,
           12347201-12347463,12347596-12347874,12348045-12349182,
           12349303-12349473
          Length = 796

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
 Frame = -2

Query: 352 NWRI---SRQVRFSLLKVTFCIFAVAAIAG 272
           NWR    + QVR+ +LK TFC FA+  I G
Sbjct: 64  NWRSRGKADQVRYVVLKWTFC-FAIGIITG 92


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,672,480
Number of Sequences: 37544
Number of extensions: 210030
Number of successful extensions: 635
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)