Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS321A02f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47075-4|CAE17757.1|  129|Caenorhabditis elegans Hypothetical pr...    61   5e-10
U52072-1|AAD11465.1|   97|Caenorhabditis elegans dauer-upregulat...    29   1.5  
AF100662-1|AAC68977.1|  900|Caenorhabditis elegans Hypothetical ...    28   3.5  
Z35663-1|CAA84725.1|  324|Caenorhabditis elegans Hypothetical pr...    28   4.7  
U64837-3|AAB04837.1|  782|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AL110477-15|CAB54331.2|  295|Caenorhabditis elegans Hypothetical...    27   6.2  
U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein ...    27   8.1  
U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein ...    27   8.1  

>Z47075-4|CAE17757.1|  129|Caenorhabditis elegans Hypothetical
           protein E02H1.8 protein.
          Length = 129

 Score = 60.9 bits (141), Expect = 5e-10
 Identities = 33/94 (35%), Positives = 49/94 (52%)
 Frame = +3

Query: 81  KAVNLKAAKKITIKFDPFGENATHTRNFAHYISAPKIAITNPNCSVKTEVLCDRSEPTVE 260
           +A+NL+  K I I  DP   +    R F H I APK+ +TNPN  VKT++  DR  P   
Sbjct: 25  RALNLQKVKSIDISLDPLHHDNLSIRTFWHSIMAPKVRLTNPNVRVKTDIRNDRRAPFFV 84

Query: 261 ITLLPAIAATAKIQKVTLRSENLTCLEILQLLNK 362
            TL          QK+   +EN+T ++++   N+
Sbjct: 85  ATLDDG-------QKLHFSTENMTAMDVIMNFNR 111


>U52072-1|AAD11465.1|   97|Caenorhabditis elegans dauer-upregulated
           protein 191 protein.
          Length = 97

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 472 SFRFCHLCFYFVFVFFLS 419
           SF FC+ CF  +FVFF S
Sbjct: 51  SFFFCYFCFVILFVFFSS 68


>AF100662-1|AAC68977.1|  900|Caenorhabditis elegans Hypothetical
           protein H34C03.2 protein.
          Length = 900

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 36  IRRSKGVVSAIGKQLKAVNL-KAAKKITIKFDPFG 137
           +R    +V  +  QLK+  +    +KI+IKFDPFG
Sbjct: 415 MRNDSIIVDTLHGQLKSTLICPVCEKISIKFDPFG 449


>Z35663-1|CAA84725.1|  324|Caenorhabditis elegans Hypothetical
           protein T04A8.1 protein.
          Length = 324

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 17/81 (20%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
 Frame = -2

Query: 454 LCFYFVFVFFLSDLV-CSVVGGSSTGAKEEMCLFNNWRISRQVRFSLLKVTFCIFAVAAI 278
           LCF  V +FF++ ++  +++      A+  + +       + V F+ +++ F  FA    
Sbjct: 211 LCFVLVIIFFVATILGLTMLKQRIKSAERSLTIVTMIMAVQTVTFASIQIYFVFFAAYTP 270

Query: 277 AGKSVISTVGSLLSHNTSVFT 215
             +SV+  + S +  +  VF+
Sbjct: 271 KIRSVLLQIVSFVFDSLYVFS 291


>U64837-3|AAB04837.1|  782|Caenorhabditis elegans Hypothetical
           protein T27E4.6 protein.
          Length = 782

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 18/80 (22%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
 Frame = -2

Query: 454 LCFYFVFVFFLSDLVCSVVGGSSTGAKEEMCLFNNWRISRQVRFSLLKVTFCI-FAVAAI 278
           LC Y++ +  +S+ V          A +EMC    W ++   +F++    F + F  + +
Sbjct: 447 LCTYWMDIIHISNFV----------AVDEMCYLPAWHLAVDFQFTIFAPFFLLAFHYSTV 496

Query: 277 AGKSVISTVGSLLSHNTSVF 218
            G ++++ + SL+    +VF
Sbjct: 497 LG-TILAIIASLIGSGLTVF 515


>AL110477-15|CAB54331.2|  295|Caenorhabditis elegans Hypothetical
           protein Y113G7B.9 protein.
          Length = 295

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -2

Query: 382 GAKEEMCLFNNWRISRQVRFSLLKVTFCIFAVAAIAGKSV 263
           G     C F+ W I R + FSL+ +   I ++  +   SV
Sbjct: 162 GCATNQCFFHYWLIQRSIIFSLIVLFSLILSIKLLMMNSV 201


>U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein 363,
            isoform b protein.
          Length = 2692

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +3

Query: 204  PNCSVKTEVLCDRSEPTVEITLLPAIAATAKIQKVTLRSENLTCLEILQLLNKHIS 371
            PNC     ++ +  E   +I   P       +QK++L +E+LT ++ LQL    +S
Sbjct: 2412 PNCDTLHTLVKEYREKKAKI---PLSIEHKTLQKLSLETEHLTLMQKLQLFESALS 2464


>U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein 363,
            isoform a protein.
          Length = 2695

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +3

Query: 204  PNCSVKTEVLCDRSEPTVEITLLPAIAATAKIQKVTLRSENLTCLEILQLLNKHIS 371
            PNC     ++ +  E   +I   P       +QK++L +E+LT ++ LQL    +S
Sbjct: 2415 PNCDTLHTLVKEYREKKAKI---PLSIEHKTLQKLSLETEHLTLMQKLQLFESALS 2467


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,834,693
Number of Sequences: 27780
Number of extensions: 216025
Number of successful extensions: 651
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)