Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS321A02f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    27   0.12 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   3.3  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   5.8  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   7.7  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   7.7  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 27.1 bits (57), Expect = 0.12
 Identities = 11/48 (22%), Positives = 23/48 (47%)
 Frame = -2

Query: 148 VAFSPNGSNFMVIFLAAFKLTAFSCFPMAETTPLDLLIVPLYGIDIIY 5
           V + P   N+         LT ++ FP+ E + +   ++P+  I ++Y
Sbjct: 185 VEYPPESGNYSADSAMCAMLTIYADFPLYELSTIIFFLIPMLIILVVY 232


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 134 KWIKFYGNFFSSL 96
           KW+  +GNF  SL
Sbjct: 574 KWLDIHGNFIESL 586


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -1

Query: 161 IPCVSCVFSKWIKFY 117
           +PCV  V   W+ F+
Sbjct: 253 VPCVLIVVLSWVSFW 267


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
            protein.
          Length = 1010

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 192  AITNPNCSVKTEVLCDRSEPTVEIT 266
            A++ PN  VK  ++  + +PT +IT
Sbjct: 985  ALSVPNIFVKDVLVFHQGQPTNDIT 1009


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -1

Query: 158 PCVSCVFSKWIKFYGN 111
           PCV  V   W+ F+ N
Sbjct: 223 PCVLLVVLSWVSFWLN 238


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,267
Number of Sequences: 438
Number of extensions: 2241
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)