Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS321A01f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce...    29   0.56 
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   5.2  
SPBC1711.04 |||methylenetetrahydrofolate reductase |Schizosaccha...    25   6.8  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    25   6.8  
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    25   9.0  
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    25   9.0  

>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 563

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -2

Query: 199 MVSCYLVKNKRFHVSITGILYVCCFSYL*VDFKK*FYIEHE 77
           ++S  L    R HVS+   +  CC + + ++  + FY++ E
Sbjct: 322 LISLELTDTARIHVSVINAIVDCCPNLISLNLSRIFYLDDE 362


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 496 NDVIVFLYLLKVIVNILRPIVSKRYFYPLLKVA 398
           N   +F+Y L ++V +    V K  FYPL KVA
Sbjct: 584 NRFTMFIYYLCILV-LATYYVMKHNFYPLRKVA 615


>SPBC1711.04 |||methylenetetrahydrofolate reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 320

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -3

Query: 63  CHNYVLQIHHN-KRATLEKKKK 1
           CH YV+ ++HN +    EK KK
Sbjct: 126 CHKYVMNMYHNIRHLDPEKTKK 147


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -1

Query: 254 FMIKKILFE*SYSNVALNNGLLLFS*E*KIPCQ 156
           +++ + L E SY N+  N+   +F    K+PCQ
Sbjct: 308 YVLYESLLEQSYDNIFFNSFDCIFFSSTKVPCQ 340


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +1

Query: 73  VLHVRYKITS*NLLINTKNNRRTKY 147
           VLH+   +TS +L I T NN+R+++
Sbjct: 518 VLHLGRTVTSVSLKIVTVNNKRSRH 542


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 354 NT*KNCMVYFDNHNCVLLLEFFK 286
           N  KN   YF + N VLL E++K
Sbjct: 195 NLPKNVSFYFHSDNTVLLNEYYK 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,832,433
Number of Sequences: 5004
Number of extensions: 31732
Number of successful extensions: 55
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)