Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS321A01f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical p...    31   0.38 
Z95621-2|CAB09131.1|  330|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z78019-9|CAB01457.1|  330|Caenorhabditis elegans Hypothetical pr...    28   3.5  
AF106575-17|AAD56300.2|  333|Caenorhabditis elegans Serpentine r...    27   8.1  

>Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical
           protein T20D3.11 protein.
          Length = 1843

 Score = 31.5 bits (68), Expect = 0.38
 Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = +3

Query: 51  HNYG--TLFRTSC-SI*NYFLKSTYKYEKQQTYKIPVMLTWNLLFLTK 185
           HNY   TL  TS  S  NY   STY   ++  YK+ V   W  L L K
Sbjct: 83  HNYPDTTLSSTSAPSTSNYLTTSTYSDNRRSLYKVDVEKYWEQLLLRK 130


>Z95621-2|CAB09131.1|  330|Caenorhabditis elegans Hypothetical
           protein ZK863.2 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 217 QTLP*TMVSCYLVKNKRFHVSITGILYVC 131
           +TLP +    YL+ NK FH++ T  ++ C
Sbjct: 293 KTLPFSFSIIYLMGNKHFHLAFTVFIFKC 321


>Z78019-9|CAB01457.1|  330|Caenorhabditis elegans Hypothetical
           protein ZK863.2 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 217 QTLP*TMVSCYLVKNKRFHVSITGILYVC 131
           +TLP +    YL+ NK FH++ T  ++ C
Sbjct: 293 KTLPFSFSIIYLMGNKHFHLAFTVFIFKC 321


>AF106575-17|AAD56300.2|  333|Caenorhabditis elegans Serpentine
           receptor, class h protein5 protein.
          Length = 333

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -1

Query: 476 ISFKGHSQYTEAHSFKALFLSSS*GSVWN*TIV 378
           + F  +  Y  AH F  L L    G++W  TI+
Sbjct: 42  VHFSKYRNYLVAHVFSGLLLELHMGTIWKVTII 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,803,276
Number of Sequences: 27780
Number of extensions: 167063
Number of successful extensions: 301
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 301
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)