Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS321A01f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   4.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   4.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   4.4  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   7.7  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   7.7  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    21   7.7  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    21   7.7  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   7.7  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 269 QLVNYYLKNSSSNTQLWLSK 328
           QL++  LKN    T LW+ +
Sbjct: 64  QLIDVNLKNQIMTTNLWVEQ 83


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 269 QLVNYYLKNSSSNTQLWLSK 328
           QL++  LKN    T LW+ +
Sbjct: 64  QLIDVNLKNQIMTTNLWVEQ 83


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 269 QLVNYYLKNSSSNTQLWLSK 328
           QL++  LKN    T LW+ +
Sbjct: 60  QLIDVNLKNQIMTTNLWVEQ 79


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 257 SFMIKKILFE*SYSNVALNNGLLL 186
           SF + K++      +  +NNGLLL
Sbjct: 453 SFTVDKLITYFEQFDTTINNGLLL 476


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 257 SFMIKKILFE*SYSNVALNNGLLL 186
           SF + K++      +  +NNGLLL
Sbjct: 453 SFTVDKLITYFEQFDTTINNGLLL 476


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -3

Query: 105 LRSNFISNMKYGTKCHNYVLQIHHN 31
           L +N+ISN+      +NY  ++++N
Sbjct: 85  LSNNYISNISNYNNNNNYNKKLYYN 109


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -3

Query: 105 LRSNFISNMKYGTKCHNYVLQIHHN 31
           L +N+ISN+      +NY  ++++N
Sbjct: 85  LSNNYISNISNYNNDNNYNKKLYYN 109


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -3

Query: 105 LRSNFISNMKYGTKCHNYVLQIHHN 31
           L +N+ISN+      +NY  ++++N
Sbjct: 323 LSNNYISNISNYNNNNNYNKKLYYN 347


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,305
Number of Sequences: 438
Number of extensions: 2450
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)