Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320H12f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0772 - 23029703-23029715,23029835-23030463,23030637-230316...    29   2.3  
10_01_0252 + 2646074-2646430,2646476-2648158                           29   2.3  
11_01_0236 + 1811822-1812971,1814930-1814979,1815676-1816116,181...    29   3.0  

>12_02_0772 -
           23029703-23029715,23029835-23030463,23030637-23031673,
           23031830-23032166
          Length = 671

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 21/44 (47%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = +1

Query: 364 INIYQH-FGFKI---INYLETFFGDDIR*KILSEFSVITR*NNY 483
           I IYQH  G K+   I YLETF G+    K+L E  V    NNY
Sbjct: 454 ITIYQHNIGSKVEDMITYLETFLGESA--KVLWEQWVEKNPNNY 495


>10_01_0252 + 2646074-2646430,2646476-2648158
          Length = 679

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -3

Query: 273 QTLTSIRSRKEIVAFLDKDSGCESYFHW*CFIGLLFLC 160
           +TL  I    +I+A ++   GC S+ H  C +    LC
Sbjct: 520 ETLEDIDLAHKIIAKMESSEGCPSFIHNACVLSKALLC 557


>11_01_0236 + 1811822-1812971,1814930-1814979,1815676-1816116,
            1816199-1816309,1816934-1817074,1817153-1817323,
            1817421-1817625,1817714-1817886,1817997-1818079,
            1818487-1818626,1818806-1818891,1818957-1819142,
            1819172-1819365,1820387-1820736,1821153-1821235
          Length = 1187

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 15/26 (57%), Positives = 16/26 (61%)
 Frame = +1

Query: 61   VAVSNGGRRKNAKLRTRRLRPVFTLD 138
            V +S GGR  N   R RRLRPV  LD
Sbjct: 972  VTLSRGGRASNLS-RGRRLRPVLLLD 996


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,093,498
Number of Sequences: 37544
Number of extensions: 289157
Number of successful extensions: 612
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)