Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320H12f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29082-2|AAT92082.1|  350|Caenorhabditis elegans Troponin t prot...    30   1.2  
U39646-3|AAA80369.1|  194|Caenorhabditis elegans Hypothetical pr...    27   6.2  
U41268-5|AAA82438.1|  349|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AF068710-1|AAC17772.1|  419|Caenorhabditis elegans Hypothetical ...    27   8.1  

>U29082-2|AAT92082.1|  350|Caenorhabditis elegans Troponin t protein
           3, isoform a protein.
          Length = 350

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 288 NYLLPQTLTSIRSRKEIVAFLDKDSGCESY 199
           NY+ PQ+L  I +R +I A+L+    C  Y
Sbjct: 292 NYIAPQSLNIISARDDIHAYLNSPDRCPKY 321


>U39646-3|AAA80369.1|  194|Caenorhabditis elegans Hypothetical
           protein F47B7.5 protein.
          Length = 194

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 224 IRILAAKAIFIGNVSLVYCSCAKTKCPDLSNVNTGRRR 111
           I I+   A+    V+   C  + TKCPDLS +  G  R
Sbjct: 53  ITIMTTLAMESSTVTKEACPTSTTKCPDLSAIIKGDMR 90


>U41268-5|AAA82438.1|  349|Caenorhabditis elegans Hypothetical
           protein T14G12.6 protein.
          Length = 349

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 218 ILAAKAIFIGNVSLVYCSCAKTKCPDLSNV 129
           +L   A+    V+  YC+ +  KCPDL++V
Sbjct: 19  MLTTPAMESSTVTEKYCAVSAAKCPDLASV 48


>AF068710-1|AAC17772.1|  419|Caenorhabditis elegans Hypothetical
           protein T06A1.1 protein.
          Length = 419

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = -2

Query: 502 PIYSNDSNCFIEL*QKIPTISFTECHHRKMFLNS**F*NRNVDKYLFY 359
           P+Y ++S  ++E+ + +      ECHHR  F +S    N ++D+ + Y
Sbjct: 188 PLYGSESK-WLEVVEYVEHYRLLECHHRSRF-HSKWVINMDIDERVIY 233


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,465,441
Number of Sequences: 27780
Number of extensions: 268431
Number of successful extensions: 494
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)