Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320H09f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.09 |tif223||translation initiation factor eIF2B|Schizosa...    49   4e-07
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon...    48   6e-07
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          28   0.73 
SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces pomb...    27   1.3  
SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr 2...    26   3.9  
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    25   5.2  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   9.0  

>SPAC4D7.09 |tif223||translation initiation factor
           eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 468

 Score = 49.2 bits (112), Expect = 4e-07
 Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
 Frame = +3

Query: 156 LEFQVVVLAAGKGSRMPDVGG-SVSKCLLPVGPYPVLWYPLNMLEKIGFQDVMIVVLDED 332
           +EFQ VV A    S  P  G  ++ K LLP+G  P+L YPL  LE  GF   +++ ++E 
Sbjct: 37  IEFQAVVFAGFGNSLYPLTGSDALPKALLPIGNKPMLHYPLYWLEAAGFTSAILICMEEA 96

Query: 333 KSNI 344
           +++I
Sbjct: 97  EAHI 100


>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 48.4 bits (110), Expect = 6e-07
 Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 5/123 (4%)
 Frame = +3

Query: 165 QVVVLAAGKGSRMPDVGGSVSKCLLPVGPYPVLWYPLNMLEKIGFQDVMIVVLDEDKSNI 344
           Q +VL+     R   +     +CLLP+   P++ Y    L   G Q+V +         I
Sbjct: 19  QAIVLSDSYNYRFRPLTLDKPRCLLPLANTPLIEYTFEFLALAGVQEVYVFCCAH-AGQI 77

Query: 345 LNALEKCPLKIK---YELIVIPSEEDWGTANSLKHVSAR--INTDLLVISGDLITNINLN 509
              +EK    +    + +  I S E     ++L+ + ++  I +D +++SGD+++N+ LN
Sbjct: 78  REYIEKSKWNLPSSPFSVNTIVSRESLSVGDALRELDSKQLITSDFILVSGDVVSNVPLN 137

Query: 510 DVL 518
           +VL
Sbjct: 138 EVL 140


>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 674

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 1/122 (0%)
 Frame = +3

Query: 144 MHKILEFQVVVLAAGKGSRMPDVGGSVSKCLLPVGPYPVLWYPLNMLEKIGFQDVMIVVL 323
           + ++  F V    AG  +R   V   +    L V P+ V+   L+M    G +   ++  
Sbjct: 125 LKRLQRFLVSENEAGNINRQEAVS-MLPPLFLDVEPHHVI---LDMCAAPGSKTAQLIEA 180

Query: 324 DEDKSNILNALEKCPLKIKYELIVIPSEEDWGTANSLKHVSARINT-DLLVISGDLITNI 500
              K+NI +A          E +VI ++ D   A  L H   R+N+ ++LV++ D  T  
Sbjct: 181 VYKKANIKDAAHDSKNLKSVEGLVIANDADPKRAQMLVHQINRLNSPNILVVNHDASTMP 240

Query: 501 NL 506
           N+
Sbjct: 241 NI 242


>SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
 Frame = +3

Query: 285 EKIGFQDVMIVVLD----EDKSNILNALEKCPLKIKYELIVIPSEED 413
           EK+ +  ++ VVL+    ED +N+ + + KC L I  E + IP+  D
Sbjct: 335 EKVAYGTLVQVVLEDWPLEDFNNLASFMAKCHLPITLEELGIPNVTD 381


>SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 518

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +2

Query: 257 STMVSIKYARKNWISR 304
           ST VS+K AR+NWI R
Sbjct: 283 STGVSMKKARENWIER 298


>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 517 STSLRFMLVMRSPDMTSKSVLILALTCF 434
           S S   M V R PD+ S++ ++L L CF
Sbjct: 508 SKSFGRMYVGRYPDVESQNAILLLLGCF 535


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/18 (55%), Positives = 11/18 (61%), Gaps = 2/18 (11%)
 Frame = +2

Query: 278 YARKNWIS--RCNDCGTR 325
           Y    WIS  RCNDC +R
Sbjct: 337 YPYNTWISTIRCNDCNSR 354


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,114,111
Number of Sequences: 5004
Number of extensions: 43663
Number of successful extensions: 109
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)