Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS320H09f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0238 - 13357877-13357954,13358186-13358302,13358537-133586... 80 1e-15
02_05_1184 + 34802749-34802892,34802981-34803220,34803636-348039... 38 0.006
11_06_0181 + 20985960-20987825,20987904-20989169 29 3.0
08_02_1448 - 27168389-27172021 28 4.0
11_06_0153 - 20693663-20693689,20693808-20694096,20694493-206948... 28 5.2
04_04_1448 + 33679110-33679140,33679858-33680057,33680163-336802... 28 5.2
02_02_0374 + 9538478-9540385 27 6.9
01_06_0051 + 25988439-25989068,25989445-25989693,25989952-259900... 27 6.9
04_04_1320 - 32623378-32623949,32624035-32624451,32624548-326248... 27 9.1
>06_02_0238 -
13357877-13357954,13358186-13358302,13358537-13358641,
13359301-13359393,13359801-13359888,13359979-13360028,
13361147-13361205,13361297-13361516,13361611-13361691,
13364034-13364111,13364203-13364298,13364370-13364435
Length = 376
Score = 79.8 bits (188), Expect = 1e-15
Identities = 45/117 (38%), Positives = 71/117 (60%), Gaps = 2/117 (1%)
Frame = +3
Query: 156 LEFQVVVLAAGKGSRM-PDVGGSVSKCLLPVGPYPVLWYPLNMLEKIGFQDVMIVVLDED 332
++FQVVVLA G ++ P V V K LLPV PVL Y L++LE +D+++VV ++
Sbjct: 1 MDFQVVVLAGGTSEKLSPLVSKDVPKALLPVANRPVLSYVLDLLEASDLKDIIVVVEGQE 60
Query: 333 KSNILNALEKCPLKIKYELIVIPSEEDWGTANSLKHVSARIN-TDLLVISGDLITNI 500
+ ++ A + + V+ ED GTA +L+ +S R+ D+LVISGDL+T++
Sbjct: 61 AARLVGAWASSAYLDRLLVEVVAVPEDIGTAGALRAISKRLTANDVLVISGDLVTDV 117
>02_05_1184 +
34802749-34802892,34802981-34803220,34803636-34803950,
34804030-34804209,34804312-34804504,34805062-34805324,
34805461-34805590,34805719-34805786,34805951-34806199,
34806284-34806357,34808052-34808143,34808603-34808685,
34810337-34810408,34810558-34810683,34810996-34811037
Length = 756
Score = 37.5 bits (83), Expect = 0.006
Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 7/125 (5%)
Frame = +3
Query: 165 QVVVLAAGKGSRMPDVGGSVSKCLLPVGPYPVLWYPLNMLEKIGFQDVMIVVLDEDKSNI 344
Q V+LA + + K LLP+ P++ Y L+ LE G ++ + + +
Sbjct: 27 QAVLLADSFTLKFRPITLERPKVLLPLVNVPMIEYTLSWLESAGVEECFVFCCAHAQQ-V 85
Query: 345 LNALEKC-----PLKIKYELIVIPSEEDWGTANSLKHVSAR--INTDLLVISGDLITNIN 503
L K P + + + S + ++L+ + R I+ D ++ISGD I+N+N
Sbjct: 86 KEHLGKAGWTGKPAAREMTVTAVESHDAISAGDALRVMYGRGVIHGDFVLISGDTISNMN 145
Query: 504 LNDVL 518
L D L
Sbjct: 146 LKDAL 150
>11_06_0181 + 20985960-20987825,20987904-20989169
Length = 1043
Score = 28.7 bits (61), Expect = 3.0
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +2
Query: 245 WAV-PSTMVSIKYARKNWISRCNDCGTR 325
W + P Y ++N+++RC+DCG R
Sbjct: 169 WTICPHCQKRFLYYQRNFLARCSDCGKR 196
>08_02_1448 - 27168389-27172021
Length = 1210
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +2
Query: 173 RVGRWKRFPYARCRRISFEMSPTCWAVPSTMVSIKYARKNWISRCN 310
R+G WK F + I +S CW + S+ + R +I C+
Sbjct: 1004 RLGLWKCFAFVEVLHIHMCLSLVCWPT-EELTSLIHLRHLYIEHCH 1048
>11_06_0153 -
20693663-20693689,20693808-20694096,20694493-20694829,
20695304-20696516,20700247-20700744
Length = 787
Score = 27.9 bits (59), Expect = 5.2
Identities = 8/14 (57%), Positives = 13/14 (92%)
Frame = +2
Query: 278 YARKNWISRCNDCG 319
Y ++N+++RCNDCG
Sbjct: 171 YYQRNFLARCNDCG 184
>04_04_1448 +
33679110-33679140,33679858-33680057,33680163-33680272,
33680372-33680591,33680672-33680794,33680892-33680960,
33681915-33682157,33682235-33682297,33682414-33682477,
33682740-33682810
Length = 397
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +3
Query: 396 IPSEEDWGTANSLKHVSARINTDLLVISGDLITNIN 503
+PS WG + K R NT L V S D + IN
Sbjct: 168 VPSSTKWGPFSGTKGKKTRTNTPLAVPSADPTSLIN 203
>02_02_0374 + 9538478-9540385
Length = 635
Score = 27.5 bits (58), Expect = 6.9
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +3
Query: 216 GSVSKCLLPVGPYPVLWYPLNMLEKIGFQDVMIVVLDEDKSNILNALEKCPLK 374
G S L+P P+ V +P LEK Q V+ ++L E N LE+ LK
Sbjct: 242 GHGSMALMPTNPFDVNPWPPPTLEKYRSQAVVHMLLFETLFNEELRLERIELK 294
>01_06_0051 +
25988439-25989068,25989445-25989693,25989952-25990074,
25990246-25990464
Length = 406
Score = 27.5 bits (58), Expect = 6.9
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Frame = +3
Query: 159 EFQVVVLAAGKGSRMP----DVGGSVSKCLLPVGPYPVLWYPLNMLEKIGFQDVMIVVLD 326
+F ++LA G S +P D G ++ + P+P W N L +GF ++
Sbjct: 315 QFDTIILATGYRSNVPSWLKDAGDLFTREGISKVPFPNSWRGRNGLYTVGFTQRGLLGTS 374
Query: 327 EDKSNI 344
D N+
Sbjct: 375 SDALNV 380
>04_04_1320 -
32623378-32623949,32624035-32624451,32624548-32624895,
32625671-32625768,32625882-32626051,32627134-32627418,
32628041-32628119,32628481-32628623,32629227-32629634
Length = 839
Score = 27.1 bits (57), Expect = 9.1
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +3
Query: 240 PVGPYPVLWYPLNMLEKIGFQDV 308
P G PV WYP + +K+ D+
Sbjct: 649 PGGRLPVTWYPASFADKVSMTDM 671
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,768,684
Number of Sequences: 37544
Number of extensions: 259903
Number of successful extensions: 605
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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