Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320H07f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    29   0.32 
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha...    27   1.3  
SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha...    26   3.9  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    25   5.2  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    25   6.8  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    25   6.8  

>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 22/73 (30%), Positives = 34/73 (46%)
 Frame = +2

Query: 209 LPTQEQQPIFQTSPINGQENQGPYFTSDIKNLDENLKQNQYQIQQENYRTFQRQKQLEAA 388
           +P Q+ Q +     I+  +NQ   F S    L    +Q Q Q QQ+  +  Q+Q+Q +  
Sbjct: 226 IPMQKLQSMPPARLISIYQNQIQKFRS----LQHMQQQQQQQQQQQQQQQQQQQQQQQQQ 281

Query: 389 QAKNQANNLPAPQ 427
           Q + Q     APQ
Sbjct: 282 QQQQQQQQKQAPQ 294


>SPBC428.18 |cdt1||replication licensing factor
           Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 444

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = +2

Query: 245 SPINGQENQGPYFTSDIKNLDENLKQNQYQIQQENY--RTFQRQKQLEAAQAKNQANNL 415
           S IN + +Q    +S ++N    L  +Q  ++Q +   R  ++QK +EA +A+   NNL
Sbjct: 277 SKINLKSHQS---SSSVQNSSRKLTSSQLTLRQSSLFDRVRKKQKAMEAKKAEEFKNNL 332


>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 184 YSILVARYYRNGWIPWVKRWQIV 116
           Y  LVA+  R  W  WV R+QIV
Sbjct: 184 YYYLVAKGIRVPWKKWVTRFQIV 206


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 251 INGQENQGPYFTSDIKNLDENLKQNQYQIQQENYRTFQRQ 370
           INGQ+ +  +   ++KN  ENL    YQ   +  R   R+
Sbjct: 883 INGQQRRSEFSAENVKNELENL---SYQFGDQRKRNLNRK 919


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 128 PFDPRNPAIPVIPSNEYGIPNDVSVQGLPTQEQ 226
           P  P+ PA+PV+P  E G  N+  V  LP  ++
Sbjct: 677 PSVPQPPAVPVVP--EAGQLNEPVVPPLPPHDE 707


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
 Frame = +2

Query: 263 ENQGPYFTSDIKNLDENL----KQNQYQIQQENYRTFQRQKQLEAAQ-AKNQANNLPA 421
           +NQ  Y TS I NL+E +    K+N    +  +     R +  EA +  KN + +L A
Sbjct: 463 KNQNDYLTSQITNLEEGMVMLNKENTKLSEALSNHRVTRSEMEEATEILKNNSADLKA 520


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,860,358
Number of Sequences: 5004
Number of extensions: 35014
Number of successful extensions: 131
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)