Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320H05f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,...    25   5.2  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   5.2  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    25   5.2  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.8  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   6.8  
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom...    25   9.0  

>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
           alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 546

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 297 CIIKTKISILHLPLYIIYKCAKFH 368
           C I  +   L   L+I++ CA+FH
Sbjct: 107 CSISKRFGTLSGALFILFSCAQFH 130


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = -2

Query: 493  VSNIGNRLKIVNGFDYMRISIY*YVKQKLC 404
            VSN+  ++K+++  D +R  IY ++  +LC
Sbjct: 2937 VSNLIEQIKVLDLNDSIRFEIYLFLASRLC 2966


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +3

Query: 18  SSRNSTIIINLNYKFEHYYDSFVKDY*TSIITDFAKATL*TNNINLFSI 164
           S+     +++L YK+  +   F K     +IT F+K  +   N NL ++
Sbjct: 331 SNNQEEEVLHLLYKYLLFSPKFPKSLLQYVITFFSKPNITEENYNLLTL 379


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +3

Query: 438 IRI*SKPFTIFRRLPIFDTIRSPTTIPH 521
           IR+ ++P TI ++  + + I+ P  +PH
Sbjct: 883 IRVSAEPLTIDQQHDLAEEIKQPRVVPH 910


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -2

Query: 199 YTLLFIV-TVCGQIENRLILFVY 134
           +T+LF+V  +CG   NR  +F+Y
Sbjct: 569 FTILFLVGLICGWRLNRFTMFIY 591


>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = +3

Query: 3   FGTRPSSRNSTIIINLNYKFEHYYDSFVKDY*TSIITDFAKATL*TNNINLF 158
           F  R +   + + +N  Y FE+    F +   + ++TDF    L   ++ LF
Sbjct: 494 FLKRSTLTENDLFLNAIYTFEYAKRKFPEALNSRLVTDFLNIFLERGSVQLF 545


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,012,183
Number of Sequences: 5004
Number of extensions: 37125
Number of successful extensions: 81
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)