Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320H05f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          25   0.36 
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      24   1.1  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    24   1.1  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    21   5.8  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 25.4 bits (53), Expect = 0.36
 Identities = 19/67 (28%), Positives = 30/67 (44%)
 Frame = -1

Query: 500 SYSVEYR*PSKNSKRF*LYADIYILIREAKTLYPFLRKLRGRRGMKFRTLIDNIERQVQN 321
           S +V YR P     +F    +IY       ++    + L+  RG    T ++NIE  + N
Sbjct: 145 SIAVLYR-PDTKYMKFPAIYEIYPNYFFDSSVIEEAQNLKMSRGSSVVTGMNNIETYIVN 203

Query: 320 TNFCFNY 300
           TN+   Y
Sbjct: 204 TNYSSKY 210


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = -1

Query: 500 SYSVEYR*PSKNSKRF*LYADIYILIREAKTLYPFLRKLRGRRGMKFRTLIDNIERQVQN 321
           S +V YR P     +F    +IY       ++    + L+  RG    T ++NIE  + N
Sbjct: 145 SIAVLYR-PDTKYMKFPAIYEIYPNYFFDSSVIEEAQNLKMSRGSSVVTGMNNIETYIVN 203

Query: 320 TNF 312
           TN+
Sbjct: 204 TNY 206


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 118 SQRLHYRQIILIYFQ 162
           +Q+ HYR I+L YF+
Sbjct: 3   NQKEHYRHILLFYFR 17


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
 Frame = -3

Query: 258 TTVHTTLIIYPTHKIH---THACILFCLLLQSV 169
           TT+  TL+ Y   KIH   T+A  +   LL S+
Sbjct: 135 TTITLTLLAYQATKIHAVDTYAASVVGYLLYSL 167


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,774
Number of Sequences: 438
Number of extensions: 2484
Number of successful extensions: 21
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)