Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320H03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces pom...    26   3.9  
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    26   3.9  
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   3.9  

>SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 464

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 244 MAIDVSRSSGYSFYRVIYTLTSLGLYLLWDSKIESA 351
           +A+D++  SG   +   Y L ++G + +W S I  A
Sbjct: 127 VAVDMNDGSGTQVFSAKYILIAVGGHPIWPSHIPGA 162


>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 379 SIAPLYKTPLHSRSSNPTR 323
           +++P+YK P+  +S  PTR
Sbjct: 325 NVSPIYKNPVAEQSDTPTR 343


>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 475

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 7/48 (14%)
 Frame = -2

Query: 358 TPLHSRSSNPTRD-------RARER*EYILHGKNCNQTNGSHQWPSNR 236
           TP+ +R S+ +R+         R R  Y  HG N  QTN S +  ++R
Sbjct: 157 TPISNRKSSRSRNDGSRRNGNGRRRGNYSSHGSNKRQTNYSREKDASR 204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,085,033
Number of Sequences: 5004
Number of extensions: 42034
Number of successful extensions: 104
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)