Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320H03f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0053 - 767131-767962,768517-769037,769384-769601,769720-76...    29   2.3  
01_06_0604 + 30536172-30537143                                         29   3.0  
05_03_0623 - 16307969-16308323,16308428-16308482,16309413-163095...    27   9.1  
01_01_1182 + 9423610-9424041,9424654-9424721,9424979-9425177,942...    27   9.1  

>10_01_0053 -
           767131-767962,768517-769037,769384-769601,769720-769825,
           769958-770017
          Length = 578

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +1

Query: 220 TTRWTADLMAIDVSRSSGYSFYRVIYTLTSLGLYLLWDSKIESA-GESCIGGLCY 381
           T  W A  M + V  S   ++Y +   L +    +L +SK+ +A   S   G CY
Sbjct: 45  TGNWRACFMILGVEFSENLAYYGISKNLVTYLTKILHESKVNAARNSSAWSGACY 99


>01_06_0604 + 30536172-30537143
          Length = 323

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -2

Query: 247 PSNRRSIGLSERCRRCFRIPRADPALVPGGGHIVMVK 137
           PS+RR  G S+ CR  F +PR   A     G   +VK
Sbjct: 223 PSSRR--GTSQSCRYSFELPRGSTASAATDGGFAVVK 257


>05_03_0623 -
           16307969-16308323,16308428-16308482,16309413-16309509,
           16309587-16309592
          Length = 170

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 240 FDGH*CEPFVWLQFLPCNIYSYLSRALSLVGFEDRECRGVLYRG 371
           FDG  C     L  LP +  S L      +   +R+CRG L++G
Sbjct: 87  FDGRLCLIKSVLSALPVHFMSVLQMPKWAIKDMERKCRGFLWKG 130


>01_01_1182 +
           9423610-9424041,9424654-9424721,9424979-9425177,
           9425349-9425446,9425539-9425608,9425948-9426061,
           9427686-9427751
          Length = 348

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +2

Query: 149 YVTPSWHQSWIRPWYPE 199
           Y+TPS H+S +R +YP+
Sbjct: 197 YITPSEHESVLRKYYPK 213


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,858,595
Number of Sequences: 37544
Number of extensions: 290213
Number of successful extensions: 780
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)