Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320H03f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     24   0.82 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    24   1.1  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   3.3  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   7.7  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 24.2 bits (50), Expect = 0.82
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 128 SS*LDHDYVTPSWHQSWIRPWYPETSATPLRQP 226
           +S +++    P+  QS   P YP TS+  L+QP
Sbjct: 421 TSPMEYRLYNPALIQSQPSPQYPSTSSHILQQP 453


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 142 VKSRTYNLILITIDTSKKQVFD 77
           V  R YN++   ID  KK+++D
Sbjct: 554 VSLRFYNVVYKLIDNIKKEIYD 575


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = -3

Query: 213 GVADVSGYQGRIQLWCQEGVT*SWSS 136
           G+ D+ G + ++  + + G+T  W S
Sbjct: 45  GIGDLKGIKDKLSHFIESGITAIWLS 70


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 485 FYNSDFHGAFS*IGSRNCLRN 423
           FY++DF  AF  +  R C ++
Sbjct: 361 FYSADFRLAFWRLTCRKCFKS 381


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,900
Number of Sequences: 438
Number of extensions: 3193
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)