Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320H02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    35   0.006
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy...    31   0.10 
SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr 3...    29   0.56 
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   0.73 
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    27   1.3  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    27   1.7  
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr...    27   2.2  
SPAC1782.03 |||microfibrillar-associated protein family protein|...    27   2.2  
SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr 2...    26   3.0  
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    26   3.0  
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    26   3.9  
SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces p...    26   3.9  
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    25   5.2  
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha...    25   6.8  
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa...    25   6.8  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    25   9.0  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    25   9.0  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    25   9.0  
SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subun...    25   9.0  

>SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 407

 Score = 35.1 bits (77), Expect = 0.006
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = +2

Query: 56  REYKSGDFIFAKVKGYPAWPARV 124
           + YK+G+++ AK+  +P WPARV
Sbjct: 59  KSYKNGEYVLAKMSSFPWWPARV 81


>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 606

 Score = 31.1 bits (67), Expect = 0.10
 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
 Frame = +2

Query: 215 ENKDKFLTKTVKRRDFNDGVKQIEHDFANNVPLEQVVGLSIGTSNTLNNDTAVEDSDDTG 394
           E K+K  T+  KR+   + +K  +++ +NN  L+Q +    G   T N+D   E+SD   
Sbjct: 524 EVKEKRNTRREKRKSKKEFLKAQKNEASNN--LKQEIVSKAGAQETENDDLIDEESDALS 581

Query: 395 ALVIDE---GKPKGRKSKA 442
            L  D     K K RK++A
Sbjct: 582 ELEEDYRQLKKSKKRKNQA 600


>SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 227

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 131 LNGKKYFVYFYGTGEIANLPPNMIFDYAENKDKFLTKTV 247
           L+G+ +F Y YG   + +L  + +      K+ F T+TV
Sbjct: 111 LHGRSHFGYIYGIALLGSLSLHFVLRLMSAKNLFFTRTV 149


>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 615

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
 Frame = +2

Query: 302 NVPLEQVVGLSIGTSNTLNNDTAVEDSDDTGALVIDEGKPKGRKSKAE-SVKTPAKPVK- 475
           +VP  QV G    T++ +NN T  E+++++ +  + E   +   +KAE +V T A   K 
Sbjct: 403 DVPKSQVGG-ETDTTDVINNSTPKEETEESPSTELPETGKEQPPNKAEPAVPTEASSTKP 461

Query: 476 ----EPKTPR 493
               E  TPR
Sbjct: 462 SEAAEESTPR 471


>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 359

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +2

Query: 71  GDFIFAKVKGYPAWPARVQR 130
           GD I  K  GYP WPA + R
Sbjct: 53  GDRILVKAPGYPWWPALLLR 72


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 22/72 (30%), Positives = 33/72 (45%)
 Frame = +2

Query: 269 GVKQIEHDFANNVPLEQVVGLSIGTSNTLNNDTAVEDSDDTGALVIDEGKPKGRKSKAES 448
           G+K++EH F N +PL    GL     +   +        D  A  I   KP  RK ++ S
Sbjct: 587 GLKKVEHFFKNILPLH--FGLEKDKFSIFLDQVFRGPDYDVNAPNIVGNKPVRRK-RSNS 643

Query: 449 VKTPAKPVKEPK 484
           +    + VK+PK
Sbjct: 644 ITQLTEFVKQPK 655


>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 568

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 38  KMGKKVREYKSGDFIFAKVKGYPAWPARV 124
           K  ++V  YK G  +  K+ G+P WP+ V
Sbjct: 116 KQSERVN-YKPGMRVLTKMSGFPWWPSMV 143


>SPAC1782.03 |||microfibrillar-associated protein family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 355

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = +2

Query: 227 KFLTKTVKRR-DFNDGVKQIEHDFANNVPLEQVVGLSIGTSNTLNNDTAVEDSDDTGAL 400
           KF +K +K R   N+   ++     +   LE+ +   +    T NN+  + D DDT  +
Sbjct: 130 KFTSKVIKNRAKANEEDTEVLKKVTSQKILEETIKRELLLKETKNNNELLNDIDDTDGI 188


>SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = +2

Query: 74  DFIFAKVKGYPAWPARVQRLNGKKYFVYFYGTGEIANLPPNMIFDYA 214
           D+I++ + GY   PA V+  +G  +  +F GT +IA   P  +FD A
Sbjct: 190 DYIYSLLTGYTEPPAGVEVPDGMNFNPFFPGT-QIAMARP--LFDDA 233


>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 456

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 17/66 (25%), Positives = 32/66 (48%)
 Frame = +2

Query: 194 NMIFDYAENKDKFLTKTVKRRDFNDGVKQIEHDFANNVPLEQVVGLSIGTSNTLNNDTAV 373
           N+ FD  +  DKF     K+ + ++ +  +  ++A+NVP           +NTL + +A 
Sbjct: 71  NVNFDKLKT-DKFAASMFKQLNASNMITTVRSNYASNVPSTPSDSTQQPPTNTLPSVSAS 129

Query: 374 EDSDDT 391
             S +T
Sbjct: 130 SQSVET 135


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
            complex subunit Tpr1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1039

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 380  SDDTGALVIDEGKPKGRKSKAESVKTPAKPVKEPKTPRGKAKRDE 514
            S+D  +L  DE K  G+K K +  K  +K  K+  +  G ++ DE
Sbjct: 925  SEDDMSLSDDEEKQSGKKKKKDRKKRKSKS-KQESSDSGVSEDDE 968


>SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 264

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/50 (24%), Positives = 21/50 (42%)
 Frame = +2

Query: 161 YGTGEIANLPPNMIFDYAENKDKFLTKTVKRRDFNDGVKQIEHDFANNVP 310
           Y +   + LP N    Y  N D  +    +  + N+    + HD +N+ P
Sbjct: 40  YNSENESGLPSNSASSYLINPDPTMDLEAQTFNHNESTTSVGHDNSNSPP 89


>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 428 RKSKAESVKTPAKPVKEPK 484
           R++K  SVK  A P+K+PK
Sbjct: 133 RENKNSSVKETAAPIKQPK 151


>SPCC1020.08 |||wybutosine biosynthesis protein
           Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 688

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 26/119 (21%), Positives = 52/119 (43%), Gaps = 5/119 (4%)
 Frame = +2

Query: 161 YGTGEIANLPPNMIFDYAENKDKFLTKTVKRRDFNDGVKQIEHDFANNVPLEQVVGLSIG 340
           +G G++ N P +     A   DK++ K   RR    GV  +    A    ++ ++  +  
Sbjct: 188 FGLGDMENYPGDKFCYQAIQADKWIKKLGARRLAPLGV--VNTQLAPTAQIDALLQWTRS 245

Query: 341 TSNTLNNDTAVE----DSDDTGALVIDEGKPKGRKSKAE-SVKTPAKPVKEPKTPRGKA 502
            +  L N T ++    DS  +  + +++      K+KAE ++    K +   ++P  KA
Sbjct: 246 VAECLKNGTLLKIGNTDSLSSDVMDVEDMGSMMAKAKAEAALPVGTKEMVSTESPTYKA 304


>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
           Ght7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = +2

Query: 299 NNVPLEQVVGLSIGTSNTLNNDTAVEDSDDTGALVIDEGKPKGRKSKAESVKTPAKPVKE 478
           NN  L+  +GL+  T+  + N     DS        D+ +P+  ++ A  ++ P K  +E
Sbjct: 459 NNATLKSHIGLNGETTELIENTDNQGDSGSFQTSTPDDSRPEQNQASATYIR-PDK--RE 515

Query: 479 PK 484
           P+
Sbjct: 516 PR 517


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
           Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 357 FSVLDVPIDNPTTCSKGTLLAKSCSICF 274
           FS LD+ +D+ T  S G  L   CS+ F
Sbjct: 445 FSDLDIFMDSVTLVSFGKSLQSPCSLIF 472


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 212 HNRISCLVVDLQFHQCHRNIQNISFHSIFVPELA 111
           H  IS   +D   H CH + +N + H IF+  +A
Sbjct: 560 HESISLQNLDND-HHCHHHHENHNMHGIFLHIIA 592


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1150

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 95   KGYPAWPARVQRLNGKKYFVYFYGTGEIAN 184
            +G    P  +++LNGKK    F+   E+ N
Sbjct: 940  QGTVVLPEEIRKLNGKKILNSFFDNEELRN 969


>SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subunit
           Rpa34 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 251

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = +2

Query: 386 DTGALVIDEGKPKGRKSKAESVKTPAKPVKEPKTPRGKAKRDESR 520
           +TG   ++E + KG++ + E  K   +   E + P+ K ++  S+
Sbjct: 203 ETGDATVEELQNKGKEKQKELKKGKREKKDEEEKPKKKKQKKSSK 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,207,305
Number of Sequences: 5004
Number of extensions: 46456
Number of successful extensions: 147
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)