Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS320G12f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 33 0.026
SPAP27G11.02 |||TPR repeat protein, unknown biological role|Schi... 30 0.18
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ... 29 0.42
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe... 28 0.73
SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 1.7
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 27 2.2
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 26 3.0
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi... 26 3.0
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar... 26 3.9
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ... 26 3.9
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 25 5.2
SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomy... 25 5.2
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 25 5.2
SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces ... 25 6.8
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 25 9.0
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 25 9.0
SPCC70.09c |mug9||conserved fungal protein|Schizosaccharomyces p... 25 9.0
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 33.1 bits (72), Expect = 0.026
Identities = 27/129 (20%), Positives = 54/129 (41%)
Frame = +2
Query: 128 VVLAIANAYNITKQPTRAKNILKRTISSIVWSPEKADGLERCWLEVAEGQISSGRTDAAK 307
+ I + Y K+ AK +R ++ +P A L++ + S D A
Sbjct: 514 IYFQIGHVYEQRKEYKLAKEAYERVLAE---TPNHAKVLQQLGWLCHQQSSSFTNQDLAI 570
Query: 308 ELLTKILNHNNSCARAYQYLGQIAEKEQNYKSAAHNYDNAWSHAGRGDLSVGYKLAHCYL 487
+ LTK L +++ A+++ +G+ +Q Y A Y A GR + + Y
Sbjct: 571 QYLTKSLEADDTDAQSWYLIGRCYVAQQKYNKAYEAYQQAVYRDGRNP-TFWCSIGVLYY 629
Query: 488 KLKKYPECI 514
++ +Y + +
Sbjct: 630 QINQYQDAL 638
>SPAP27G11.02 |||TPR repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 30.3 bits (65), Expect = 0.18
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +2
Query: 344 CARAYQYLGQIAEKEQNYKSAAHNYDNAWSHAGRGDLSVGYKLAH 478
CA A+ LGQIAE++ N A +Y N+ + + G L+H
Sbjct: 289 CAAAFYTLGQIAERQGNIDLALKHYKNSEALRKDDPYNDGSMLSH 333
>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 862
Score = 29.1 bits (62), Expect = 0.42
Identities = 19/82 (23%), Positives = 35/82 (42%)
Frame = +2
Query: 245 ERCWLEVAEGQISSGRTDAAKELLTKILNHNNSCARAYQYLGQIAEKEQNYKSAAHNYDN 424
++ WL A + SG D A+ L + ++ CA Y YL ++ +Q + + +
Sbjct: 705 QKLWLTAASLFLKSGNDDQARSALLEAKKIDHECAWVY-YLNGLSLLQQGKEVEGYEQLD 763
Query: 425 AWSHAGRGDLSVGYKLAHCYLK 490
+ D + LA C L+
Sbjct: 764 VAHYLDPEDPLISTALAKCLLQ 785
>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 738
Score = 28.3 bits (60), Expect = 0.73
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = -3
Query: 273 PSATSSQHLSSPSAFS 226
PS +S+ H+SSPSAFS
Sbjct: 62 PSTSSTSHISSPSAFS 77
>SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 27.1 bits (57), Expect = 1.7
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = +2
Query: 308 ELLTKILNHNNSCARAYQYLGQIAEKEQNYKSAAHNYDNAWSHAGRGDLSVGYKLAHCYL 487
E LTK N + + ++A++EQ + AAH + ++ RG L+ + A+ Y+
Sbjct: 197 EPLTKRQRQNQQKKLRAKEMQELADEEQRRRLAAHRKELHEANRPRGGLNNSSRSAYSYI 256
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 26.6 bits (56), Expect = 2.2
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = -2
Query: 319 REQFFGSVRPSGTYLS-LCHFQPASFESV-SLFWRPHDGRNSSFEDVLRARRLF 164
+E G+ + + YLS L PA ++ S+F HD + S+ E R R ++
Sbjct: 246 QEMSVGTTKENTNYLSQLVGLHPAIPPAIPSMFPMSHDNKKSNMESTSRTRNVY 299
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 26.2 bits (55), Expect = 3.0
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 364 ILVGSSTRVVVV*DFREQFFGSVRPSG 284
+LVG STR+ V + E FFG G
Sbjct: 365 VLVGGSTRIPKVQELLESFFGKKASKG 391
>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
Tom70|Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 26.2 bits (55), Expect = 3.0
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +2
Query: 347 ARAYQYLGQIAEKEQNYKSAAHNYDNAWSHAGRGDLSV 460
+ Y Y G+I +Q + A N+D+A R L++
Sbjct: 483 SEVYNYFGEILLDQQKFDDAVKNFDHAIELEKREHLTI 520
>SPAC1B3.08 |||COP9 signalosome complex subunit 12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 423
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 356 YQYLGQIAEKEQNYKSAAHNYDNAWSHAGRG 448
+ YLG +A QNYK+A+ + A+S +G
Sbjct: 235 HYYLGIVAFLNQNYKNASAELEIAFSLCHKG 265
>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 25.8 bits (54), Expect = 3.9
Identities = 19/88 (21%), Positives = 37/88 (42%)
Frame = +2
Query: 254 WLEVAEGQISSGRTDAAKELLTKILNHNNSCARAYQYLGQIAEKEQNYKSAAHNYDNAWS 433
W + + +GR D A + N + + +G I E+ ++YK A YD A
Sbjct: 502 WYGLGMVYLKTGRNDQADFHFQRAAEINPNNSVLITCIGMIYERCKDYKKALDFYDRACK 561
Query: 434 HAGRGDLSVGYKLAHCYLKLKKYPECII 517
+ L+ +K A + L + + ++
Sbjct: 562 LDEKSSLA-RFKKAKVLILLHDHDKALV 588
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 335 NNSCARAYQYLGQIAEKEQNYKSA 406
+N A AY+ +G+I+E + YKSA
Sbjct: 946 SNEAAIAYESVGKISEAIEAYKSA 969
>SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 276
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +2
Query: 185 NILKRTISSIVWSPEKADGLERCWLEVAEGQISSGR 292
NI + I+ I P+ G ER W V + +GR
Sbjct: 66 NIKREDITLITKIPDSLQGFERTWKAVEQSLRRTGR 101
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 25.4 bits (53), Expect = 5.2
Identities = 16/65 (24%), Positives = 25/65 (38%)
Frame = +2
Query: 35 QLATKNKGQAERVLQDLLPLVTEDGYQDDPYVVLAIANAYNITKQPTRAKNILKRTISSI 214
Q A K + + + + P Y +P V+ A YN T A + L I+
Sbjct: 112 QAAALTKCREQTFVDKVWPYTNRPDYHCEPSVMAASGFVYNPTADAKDAAHCLYCDINLH 171
Query: 215 VWSPE 229
W P+
Sbjct: 172 DWEPD 176
>SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 227
Score = 25.0 bits (52), Expect = 6.8
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = -3
Query: 324 IFVSSSLAASVRPELICPSATSSQHLSSPSAFSGDHTMDEIVLLRMFFARVGCLV 160
IFVS + A + P + PS+ SSP A+S + +LR + ++G V
Sbjct: 161 IFVSFTAADNTLPTITTPSS------SSPDAYSSGSSRRTSNVLRQAYKKLGIFV 209
>SPAPB8E5.07c |||ribosome biogenesis protein
Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1163
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +2
Query: 425 AWSHAGRGDLSVGYKLAHCYLKL-KKY 502
AWSH G+ +L V K+ H + K+ +KY
Sbjct: 915 AWSHEGKANLRV--KVRHLFEKMGRKY 939
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +2
Query: 29 LLQLATKNKGQAERVLQDLLPLVTEDGYQDDPYVVLAIANAYN 157
+LQL + A +L+ L PL+T VVLA +N
Sbjct: 959 ILQLLLNSTATASNILESLSPLLTSGLKSISKEVVLAAIKFWN 1001
>SPCC70.09c |mug9||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 208
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +2
Query: 218 WSPEKADGLERCWLEVAEGQISSGRTDAAK 307
W E+ R W +VAEG++ + AA+
Sbjct: 57 WKYERPLETIRAWQDVAEGKVPASNEKAAR 86
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,003,987
Number of Sequences: 5004
Number of extensions: 37743
Number of successful extensions: 160
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -