Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS320G08f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 35 0.008
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy... 33 0.034
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 27 1.7
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 27 2.2
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom... 26 3.0
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom... 26 3.0
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch... 26 3.9
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar... 26 3.9
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce... 25 5.2
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 25 6.8
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 25 6.8
SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase |Schizosaccharom... 25 6.8
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 25 9.0
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.0
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 25 9.0
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo... 25 9.0
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo... 25 9.0
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 34.7 bits (76), Expect = 0.008
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = -1
Query: 326 IKDETEDNVNENHDNAETEIIITDNVQNSNGSEHILNQNVSSVQSEDIDDVVSRI 162
I DE E++ ++ D +TE+II D N S H+ + + S + E IDD S +
Sbjct: 393 IPDEDEES-DQYSDVEDTEVIIEDQ-DNQEISNHVAEEKIDSDEEETIDDAKSEM 445
>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 32.7 bits (71), Expect = 0.034
Identities = 20/83 (24%), Positives = 41/83 (49%)
Frame = -1
Query: 350 NINQVPIEIKDETEDNVNENHDNAETEIIITDNVQNSNGSEHILNQNVSSVQSEDIDDVV 171
N + P + + NVNE ++ ETE + + +N+ +E ++NQ ++ V
Sbjct: 409 NHQEKPSSLPAVEQINVNEENNTPETEGLEDEKEENNTAAESLINQEETTSGEAVTKSTV 468
Query: 170 SRISTLDLNNADSNGLIDES*MK 102
S+ + A+ N +I+E+ +K
Sbjct: 469 E--SSANEEEAEPNEIIEENAVK 489
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 27.1 bits (57), Expect = 1.7
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Frame = -1
Query: 377 AKGIAGIRTNI-----NQVPIEIKDETEDNVNENHDNAETEIIIT-DNVQNSNGSEHILN 216
AK I GI N+ N+ K+ETED + N D E I T + S+ S+ +++
Sbjct: 62 AKAIGGIVENVPVWNPNRTSPVKKEETEDLPSFNGDTEEKPFIKTEEGAPASSQSQVVVS 121
Query: 215 QNVSS 201
N++S
Sbjct: 122 SNLTS 126
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 26.6 bits (56), Expect = 2.2
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Frame = -1
Query: 377 AKGIAGIRTNINQVPIEIKDETEDNVNENHDNAETEIIITDNVQNSNGSEHILNQNVSSV 198
A GI T ++ PI + ++ E N N+++ E+I DN+ N N NQ V+
Sbjct: 359 ANGIESDFTRVDHEPIIVNNDDE---NGNNESENEEVIEEDNL-NRNVIAEAQNQVVA-- 412
Query: 197 QSEDIDDVVSRISTLDLNNADS-NGLID 117
E+ + V + ++AD +G+++
Sbjct: 413 -DEERNAVARAAQIAEADDADDFDGILE 439
Score = 25.4 bits (53), Expect = 5.2
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Frame = -1
Query: 344 NQVPIEIKDETEDNVN--ENHDNAETEIIITDNVQ---NSNGSEHILNQNVSSVQSEDID 180
N VP+E NV+ + D+ + + + +SN SE+I++ V+ + D
Sbjct: 306 NSVPVEFNSLHSQNVDYRDEVDSLRPQFNVDEQSSISHSSNASENIVDGAVTQANGIESD 365
Query: 179 DVVSRISTLDLNNADSNG 126
+ +NN D NG
Sbjct: 366 FTRVDHEPIIVNNDDENG 383
>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 892
Score = 26.2 bits (55), Expect = 3.0
Identities = 8/32 (25%), Positives = 20/32 (62%)
Frame = -1
Query: 308 DNVNENHDNAETEIIITDNVQNSNGSEHILNQ 213
D++ D+AE + + DN +NG++++ ++
Sbjct: 742 DDIEVEEDDAEAQELENDNTNTTNGNDNVSSE 773
>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 659
Score = 26.2 bits (55), Expect = 3.0
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = -1
Query: 257 DNVQNSNGSEHILNQNVSSVQSEDIDDVVSRISTLDLNNADSNGLIDES 111
+ VQ +N S L+Q + + + +SRI L+ + A SN L+D S
Sbjct: 200 NTVQANNSSTSSLSQGAQT-GIDSSSNYLSRIEMLESSLAKSNSLLDSS 247
>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 681
Score = 25.8 bits (54), Expect = 3.9
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 371 GIAGIRTNINQVPIEIKDETEDNVNENH 288
G G+R+ ++Q+P E D T D + H
Sbjct: 328 GEKGLRSELSQIPTENIDSTTDRFDNYH 355
>SPBC26H8.09c |snf59||SWI/SNF complex subunit
Snf59|Schizosaccharomyces pombe|chr 2|||Manual
Length = 515
Score = 25.8 bits (54), Expect = 3.9
Identities = 16/59 (27%), Positives = 31/59 (52%)
Frame = -1
Query: 350 NINQVPIEIKDETEDNVNENHDNAETEIIITDNVQNSNGSEHILNQNVSSVQSEDIDDV 174
N N+ + D E+HDN++ E + N+ +SN E + + S+ +S ++DD+
Sbjct: 57 NSNKESTNLDDLNMLEEPEHHDNSKKE---STNLDDSNMLEEPKHHDNSNKESTNLDDL 112
>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1112
Score = 25.4 bits (53), Expect = 5.2
Identities = 15/73 (20%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Frame = -1
Query: 338 VPIEIKDETEDNVNENHDNAETEIIITDNVQNSNGSEHILNQN-----VSSVQSEDIDDV 174
V ++K+ E++ +EN + E + +TD++ ++ L +N + S+ + + D +
Sbjct: 369 VAAKLKEIKENSFSENQQSDEADYNVTDDLILQLATQQSLEENKKSKELFSLSASEFDKL 428
Query: 173 VSRISTLDLNNAD 135
S T ++ + D
Sbjct: 429 NSEKKTFEILSTD 441
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 25.0 bits (52), Expect = 6.8
Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Frame = -1
Query: 305 NVNENHDNAETEIIITDNVQNSNGSEHI-LNQNVSSVQSEDIDDVVSRISTLDLNNADSN 129
++ N ++A + S+ HI N V + DID + S + N D+N
Sbjct: 459 DIFSNRNHATIRSALFSQRYPSHSKRHIHFNDRVQQCIAVDIDSLPSDSESASYNTDDAN 518
Query: 128 GLIDES*MKISKLHLSN 78
++ S IS +S+
Sbjct: 519 SVVSPSKDGISTTTVSS 535
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 25.0 bits (52), Expect = 6.8
Identities = 8/33 (24%), Positives = 22/33 (66%)
Frame = +3
Query: 219 QNVFRSITILHIICYYNFSFCIIMIFVDIIFSF 317
+N+F+ + +L +ICY + F I+++ + ++ +
Sbjct: 1025 RNLFQIVFVLAVICYSSPMFMILIVPLFFLYRY 1057
>SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 236
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = -1
Query: 341 QVPIEIKDETEDNVNENHDNAETEIIITDNVQN 243
Q+P+E+K + D V EN+ + ET + +N+ N
Sbjct: 163 QMPLELKCQLADIVIENNSDLET---LYENIHN 192
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/39 (28%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Frame = -1
Query: 347 INQVPIE-IKDE-TEDNVNENHDNAETEIIITDNVQNSN 237
+N VP + + D+ T+D +N ++ + + E+I T +++ N
Sbjct: 366 LNNVPSKSLNDDITQDELNSSNADVDEEVIETTSLEEKN 404
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1
Query: 200 VQSEDIDDVVSRISTLDLNNADSN 129
+Q D+DD V+ I +L NNA ++
Sbjct: 535 LQDSDVDDEVATIRSLKQNNATNS 558
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 24.6 bits (51), Expect = 9.0
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = -1
Query: 368 IAGIRTNINQVPIE--IKDETEDNVNENHDNAETEIIITDNVQNSNGSEHILNQNVSSVQ 195
I +RT+I I+ + T+DN N N ET +TD ++ I + +
Sbjct: 1151 INNLRTSIANGDIKEPLDVVTDDNTNSNFSLEETNASVTDMPESEKHENGIFQ---AYLL 1207
Query: 194 SEDIDDVVSRISTL 153
E +D+VS+ L
Sbjct: 1208 KEMPNDIVSQFEML 1221
>SPBC18A7.02c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/16 (62%), Positives = 11/16 (68%), Gaps = 1/16 (6%)
Frame = -3
Query: 507 WRIRVYFTTGW-DFVH 463
W+IR YF GW D VH
Sbjct: 391 WKIRWYFLDGWIDGVH 406
>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
Tip1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = -1
Query: 332 IEIKDETEDNVNENHDNAET--EIIITDN 252
+E E E+N +++HD+ ET E+ T+N
Sbjct: 417 LETTQEVEENDSDSHDDEETWCEVCETNN 445
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,713,643
Number of Sequences: 5004
Number of extensions: 30689
Number of successful extensions: 135
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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