Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS320G08f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0719 + 22500217-22500395,22500506-22500551,22500671-225007... 33 0.14
03_05_0226 - 22115285-22115404,22115477-22116661,22117037-221178... 33 0.14
12_01_0914 + 8901915-8902574 29 2.3
04_03_0830 - 20125827-20125913,20126262-20126357,20126974-201270... 29 3.0
09_04_0634 - 19132916-19134033,19134716-19135915,19136002-191361... 28 5.2
07_01_0218 - 1623373-1625418 28 5.2
07_01_1057 + 9284549-9285237,9285334-9285797,9286023-9286556,928... 27 6.9
06_01_0779 - 5823389-5823787 27 6.9
06_01_0026 + 265755-265968,267319-267468,267694-267738,267786-26... 27 6.9
03_06_0167 - 32115770-32115886,32116388-32117102,32117178-321173... 27 6.9
02_05_1335 - 35770403-35770543,35770630-35770755,35770859-357709... 27 6.9
08_02_1554 + 27841801-27842007,27842282-27842455,27842554-278426... 27 9.1
07_01_0864 - 7185070-7185141,7185274-7185402,7185585-7185695,718... 27 9.1
03_05_0064 - 20385290-20385346,20385452-20387133,20387266-203880... 27 9.1
>12_02_0719 +
22500217-22500395,22500506-22500551,22500671-22500745,
22500846-22500932,22501077-22501148,22501267-22501338,
22501448-22501519,22501644-22502510
Length = 489
Score = 33.1 bits (72), Expect = 0.14
Identities = 14/52 (26%), Positives = 30/52 (57%)
Frame = -1
Query: 332 IEIKDETEDNVNENHDNAETEIIITDNVQNSNGSEHILNQNVSSVQSEDIDD 177
++ ++ TED+ N ++AE EII+ +N N +E+ + + + E+ D+
Sbjct: 177 MDTENVTEDDDNSGKNDAENEIIVNENEGEENSAENTFSLSSPDITLEEHDN 228
>03_05_0226 -
22115285-22115404,22115477-22116661,22117037-22117861,
22118029-22118106,22118370-22118420,22118510-22118581,
22118666-22118667,22119453-22119557,22119668-22119749,
22120178-22120227,22120514-22120567,22121084-22121164,
22121567-22121656,22121884-22121964,22122304-22122544
Length = 1038
Score = 33.1 bits (72), Expect = 0.14
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Frame = -1
Query: 329 EIKDET-EDNVNENHDNAETEIIITDNVQNS-NGSEHILNQ---NVSSVQSEDIDDVVSR 165
+++DE EDN EN + + NVQNS + S I NQ NV +V+S D+D
Sbjct: 303 QVEDEDLEDNELENWNLDMFNLSNGQNVQNSADNSTEIGNQATTNVDTVESNDLDANGEM 362
Query: 164 ISTLDLNN 141
++ D+NN
Sbjct: 363 LTEEDINN 370
>12_01_0914 + 8901915-8902574
Length = 219
Score = 29.1 bits (62), Expect = 2.3
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -1
Query: 329 EIKDETEDNVNENHDNAETEIIITD 255
E++D+++ VNE +DN E EI + D
Sbjct: 137 EVEDKSKSKVNEANDNLEEEIALLD 161
>04_03_0830 -
20125827-20125913,20126262-20126357,20126974-20127053,
20127124-20127220,20127457-20127544,20128491-20128576,
20129358-20130530
Length = 568
Score = 28.7 bits (61), Expect = 3.0
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +3
Query: 396 PLHPPPASMITSTELSH 446
P HPPPAS +ST SH
Sbjct: 71 PFHPPPASASSSTPTSH 87
>09_04_0634 -
19132916-19134033,19134716-19135915,19136002-19136106,
19136273-19136315,19137622-19137740,19138074-19138172,
19138264-19138480
Length = 966
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/67 (22%), Positives = 33/67 (49%)
Frame = -1
Query: 353 TNINQVPIEIKDETEDNVNENHDNAETEIIITDNVQNSNGSEHILNQNVSSVQSEDIDDV 174
T+ + PI ++ ED+++ H +E + + ++N N + VQ+ED +
Sbjct: 334 TSQSTSPIMVESLMEDSMDALHIISEVSPSLEEKAGSANAESVTENSRIDFVQTEDQLKL 393
Query: 173 VSRISTL 153
+ ++TL
Sbjct: 394 TNAVNTL 400
>07_01_0218 - 1623373-1625418
Length = 681
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -1
Query: 254 NVQNS-NGSEHILNQNVSSVQSEDIDDVVSRISTLDLNNADS 132
NVQN N S H+L + ++QS + D+ + +D+N S
Sbjct: 137 NVQNDGNASNHMLAVELDTIQSVEFRDINANHVGVDINGLQS 178
>07_01_1057 +
9284549-9285237,9285334-9285797,9286023-9286556,
9286983-9287017
Length = 573
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -1
Query: 254 NVQNS-NGSEHILNQNVSSVQSEDIDDVVSRISTLDLNNADS 132
NVQN+ N + H+ + +VQ+ D DV + +++NN S
Sbjct: 128 NVQNNGNTTNHLFAVELDTVQNTDFQDVNANHVGINVNNLHS 169
>06_01_0779 - 5823389-5823787
Length = 132
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = -1
Query: 248 QNSNGSEHILNQNVSSVQSEDIDDVVSRISTLDLNNADSNGLI 120
Q S EH + +NV+ + ++++ + L L+ DS+GL+
Sbjct: 3 QQSTADEHGVERNVAGAPAHELNEADAVCRALGLHVPDSDGLL 45
>06_01_0026 +
265755-265968,267319-267468,267694-267738,267786-268460,
268779-268843,268854-269073,269163-269438,269547-269663,
269776-269853,269930-270184,270235-270323,270403-270816
Length = 865
Score = 27.5 bits (58), Expect = 6.9
Identities = 18/80 (22%), Positives = 37/80 (46%)
Frame = -1
Query: 317 ETEDNVNENHDNAETEIIITDNVQNSNGSEHILNQNVSSVQSEDIDDVVSRISTLDLNNA 138
ET++N N N + +N SNGS + N S ++ + + + + + + +
Sbjct: 175 ETQENANSQETNENSNNSSLENRSPSNGSHEVCN----SGETVTVANGKAGLKVITIIDK 230
Query: 137 DSNGLIDES*MKISKLHLSN 78
+ NGL + + LH++N
Sbjct: 231 NQNGLANSN----GSLHIAN 246
>03_06_0167 -
32115770-32115886,32116388-32117102,32117178-32117383,
32118094-32118138,32119047-32119109,32119726-32119749,
32120673-32120772,32120814-32120907,32121036-32121074,
32121605-32121668
Length = 488
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/48 (25%), Positives = 25/48 (52%)
Frame = -1
Query: 320 DETEDNVNENHDNAETEIIITDNVQNSNGSEHILNQNVSSVQSEDIDD 177
+ET + N + ET+ + +D ++N G+++ N+ S + D D
Sbjct: 225 EETMSDYNSKESDWETDSVKSDEMENVEGTQYDANKEGSVGEDSDTID 272
>02_05_1335 -
35770403-35770543,35770630-35770755,35770859-35770942,
35771444-35771656,35771759-35771977
Length = 260
Score = 27.5 bits (58), Expect = 6.9
Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = -1
Query: 359 IRTNINQVPIEIKDETEDNVNENHDNAETEIIITDNVQNSNGSEHILNQNVS--SVQSED 186
+R N+N+ E+K E+N + +N + ++ Q+ + +H + + + +S
Sbjct: 162 LRINLNKAEEEVKLLFEENKILDEENKKLLALLEKERQHRSERKHSSSASTTKHKRKSSS 221
Query: 185 IDDVVSRISTLDLNNADSN 129
+ D T+D N ADS+
Sbjct: 222 LKDTSPVGRTIDFNGADSS 240
>08_02_1554 +
27841801-27842007,27842282-27842455,27842554-27842653,
27843273-27843725,27843936-27844469,27844500-27844580,
27844690-27844781,27844890-27844963,27845071-27845293,
27845429-27845522,27845607-27845761,27845899-27846129,
27846803-27847003,27847257-27847382,27847497-27847558,
27847775-27847892,27848040-27848324,27848475-27848513
Length = 1082
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/61 (24%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Frame = -1
Query: 302 VNENHDNAETEI-IITDNVQNSNGSEHILNQNVS-SVQSEDIDDVVSRISTLDLNNADSN 129
V++ H+ + + ++ +NS+ S N +S S+Q++D++++ + L+L++ SN
Sbjct: 436 VDQKHNRGKEFLYLLKVGFENSSYSNSQGNAELSWSIQTDDLENLELKFGRLELDDGFSN 495
Query: 128 G 126
G
Sbjct: 496 G 496
>07_01_0864 -
7185070-7185141,7185274-7185402,7185585-7185695,
7186114-7186292,7186479-7186576,7186691-7186956,
7187895-7188050,7188131-7188319,7188711-7188824,
7189131-7189273,7189683-7189818,7189954-7190058
Length = 565
Score = 27.1 bits (57), Expect = 9.1
Identities = 20/67 (29%), Positives = 31/67 (46%)
Frame = -1
Query: 284 NAETEIIITDNVQNSNGSEHILNQNVSSVQSEDIDDVVSRISTLDLNNADSNGLIDES*M 105
+A +E+ T N N N L + SS+Q D + +V+ T D +N ++DE M
Sbjct: 433 SALSEMGATGNDINVNEFAKDLEKIFSSIQDLDTEVIVATARTPDATAVSANVVVDERQM 492
Query: 104 KISKLHL 84
L L
Sbjct: 493 NALFLDL 499
>03_05_0064 -
20385290-20385346,20385452-20387133,20387266-20388083,
20388184-20388303,20389036-20389305,20390094-20390269
Length = 1040
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/18 (55%), Positives = 16/18 (88%)
Frame = -1
Query: 323 KDETEDNVNENHDNAETE 270
++ET+D V+ +HD+AETE
Sbjct: 99 EEETKDLVSSSHDDAETE 116
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,286,506
Number of Sequences: 37544
Number of extensions: 170408
Number of successful extensions: 579
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -