Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320G06f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   3.9  
SPBC83.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    25   5.2  
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p...    25   6.8  

>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -3

Query: 390  IRQAQLATICTNVLKINCSSFVLMS 316
            I  A+L+TIC +VLK + +S +L S
Sbjct: 3548 ISSAKLSTICRSVLKASVNSALLTS 3572


>SPBC83.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 161

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 502 YKLTIPINYIRISTTAGP 449
           YK  + INYI +S+ +GP
Sbjct: 35  YKCVLTINYISVSSMSGP 52


>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 718

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 18/61 (29%), Positives = 23/61 (37%)
 Frame = -2

Query: 487 PINYIRISTTAGPLVVIKHYVLCSARTI*HLCHPSSSAGDNMYKRTKNKLLIICIDVCHQ 308
           P  Y  +    GPL  I HY   +  T   +C       DN + R  N L     D  +Q
Sbjct: 273 PGRYSILGILTGPLARIIHYEKATNTTEIRICK------DNSFVRINNDLWSTVADFMNQ 326

Query: 307 H 305
           H
Sbjct: 327 H 327


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,889,379
Number of Sequences: 5004
Number of extensions: 34926
Number of successful extensions: 71
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)