Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320G06f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ178242-1|ABA18181.1|  578|Caenorhabditis elegans Frizzled homo...    29   2.0  
AF016413-2|ABA54421.1|  578|Caenorhabditis elegans Caenorhabditi...    29   2.0  
AF016413-1|ABA54422.1|  550|Caenorhabditis elegans Caenorhabditi...    29   2.0  
AB026113-1|BAA84678.1|  550|Caenorhabditis elegans Cfz2 protein.       29   2.0  
Z70783-2|CAA94851.1|  195|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z81542-1|CAB04414.1|  379|Caenorhabditis elegans Hypothetical pr...    27   6.2  

>DQ178242-1|ABA18181.1|  578|Caenorhabditis elegans Frizzled homolog
           protein.
          Length = 578

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -3

Query: 342 NCSSFVLMSVTSTAILLIKQTVVNIIIW*AAAWLCPWHCLSAW 214
           +CS    +  +S  I LIK   + I+ W +  W+C    LS+W
Sbjct: 485 SCSPKQTIGDSSLIISLIKTCCMCILGWTSGFWVCSTKTLSSW 527


>AF016413-2|ABA54421.1|  578|Caenorhabditis elegans Caenorhabditis
           frizzled homologprotein 2, isoform a protein.
          Length = 578

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -3

Query: 342 NCSSFVLMSVTSTAILLIKQTVVNIIIW*AAAWLCPWHCLSAW 214
           +CS    +  +S  I LIK   + I+ W +  W+C    LS+W
Sbjct: 485 SCSPKQTIGDSSLIISLIKTCCMCILGWTSGFWVCSTKTLSSW 527


>AF016413-1|ABA54422.1|  550|Caenorhabditis elegans Caenorhabditis
           frizzled homologprotein 2, isoform b protein.
          Length = 550

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -3

Query: 342 NCSSFVLMSVTSTAILLIKQTVVNIIIW*AAAWLCPWHCLSAW 214
           +CS    +  +S  I LIK   + I+ W +  W+C    LS+W
Sbjct: 485 SCSPKQTIGDSSLIISLIKTCCMCILGWTSGFWVCSTKTLSSW 527


>AB026113-1|BAA84678.1|  550|Caenorhabditis elegans Cfz2 protein.
          Length = 550

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -3

Query: 342 NCSSFVLMSVTSTAILLIKQTVVNIIIW*AAAWLCPWHCLSAW 214
           +CS    +  +S  I LIK   + I+ W +  W+C    LS+W
Sbjct: 485 SCSPKQTIGDSSLIISLIKTCCMCILGWTSGFWVCSTKTLSSW 527


>Z70783-2|CAA94851.1|  195|Caenorhabditis elegans Hypothetical
           protein ZK856.4 protein.
          Length = 195

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -1

Query: 437 KTLCSVLCTNNMTLVSSVKLSWRQYVQTY*K*IAHHLY*CLSPA 306
           K  C+++  NNM    ++++S   +  T    + H+LY C SP+
Sbjct: 58  KNTCNMVLDNNMVCNGAIEVSAMYFGWTPAVKLCHNLYMCASPS 101


>Z81542-1|CAB04414.1|  379|Caenorhabditis elegans Hypothetical
           protein F49A5.2 protein.
          Length = 379

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = -1

Query: 518 YGDNSVQTYNSN*LYSNFDYCRTSSRYKTLCSVLCTNNMTLVSSVKLSWRQYVQT 354
           + DN    YN++  Y  +D   T +  +T C   C N   LVS    +  +YVQ+
Sbjct: 242 HDDNCDNIYNNH-CYLRYDLSYTVAEAQTFCKTKCAN---LVSINSANENRYVQS 292


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,660,424
Number of Sequences: 27780
Number of extensions: 203421
Number of successful extensions: 360
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)