Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS320G04f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0307 + 3382432-3382608,3382690-3382863,3383600-3383695,338... 32 0.32
11_03_0177 + 11269754-11270320,11271701-11272180,11272663-112732... 31 0.56
11_08_0101 + 28352774-28353865 29 2.3
04_04_1591 + 34647817-34648416 28 5.2
01_06_1196 + 35322662-35324212 27 6.9
01_01_0277 + 2274383-2274465,2274889-2274955,2275040-2275110,227... 27 6.9
03_02_0467 + 8707777-8707892,8708030-8708096,8708190-8708260,870... 27 9.1
02_03_0093 - 15120951-15121344,15121658-15121953,15122119-151224... 27 9.1
01_06_0596 - 30495138-30495202,30496196-30496315,30496863-304969... 27 9.1
>10_01_0307 +
3382432-3382608,3382690-3382863,3383600-3383695,
3384640-3384709,3385878-3386002,3387128-3387268,
3387362-3387519,3387644-3387803,3390136-3390213,
3390326-3390385,3390473-3390528,3391886-3392090,
3394107-3394192,3394296-3394406,3394536-3394607,
3395453-3395538,3395730-3395878,3396107-3396250,
3396335-3396442,3396997-3397027,3397609-3397713,
3398283-3398407,3398807-3398950,3399073-3399177,
3400748-3400799,3401549-3401696,3401936-3402130,
3402404-3402647,3403152-3403259,3403887-3404034,
3405467-3405525,3405876-3405945,3407008-3407333,
3407666-3409204,3410526-3410733,3410870-3410906,
3411024-3411072,3411143-3411271
Length = 2025
Score = 31.9 bits (69), Expect = 0.32
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 17 TIFVFLIITSFLEVLSLECYVCENQEDNN 103
T +F + +F+++LS Y C N EDNN
Sbjct: 806 TCIIFHLQLAFIKILSQSHYACSNSEDNN 834
>11_03_0177 + 11269754-11270320,11271701-11272180,11272663-11273292,
11273377-11273443,11273510-11273620,11273696-11275206
Length = 1121
Score = 31.1 bits (67), Expect = 0.56
Identities = 25/114 (21%), Positives = 45/114 (39%), Gaps = 1/114 (0%)
Frame = +2
Query: 56 VLSLECYVCENQEDNNGKCVNTIKPCE-HNQDVCLTEIRWGSTPYWSQGAKKQYYISKSC 232
V+ L + E Q + G ++TI + V + W S G +QY+ S +
Sbjct: 780 VVELASIIPETQHASVGGPLSTISLAALEGKTVLSHSLTWESALNEQSGVSQQYH-SSAM 838
Query: 233 SNKTECPKTRQQNMPLCTYIWYQDWKCSDCCLGDRCNYYIISGSRQNMPFNRII 394
EC Q++ T + S C + N I+S + Q+ P ++ +
Sbjct: 839 VESPECVAESSQSIDDSTITQLCSFDMSQCIDAELGNSLIVSNNTQDTPISKYV 892
>11_08_0101 + 28352774-28353865
Length = 363
Score = 29.1 bits (62), Expect = 2.3
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 263 QQNMPLCTYIWYQDWKCSDCCLGDRCNYY 349
QQ+ L ++ DW+ DCC C+YY
Sbjct: 339 QQSSSLTNFLLTMDWRMDDCC----CHYY 363
>04_04_1591 + 34647817-34648416
Length = 199
Score = 27.9 bits (59), Expect = 5.2
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = +2
Query: 197 GAKKQYYISKSCSNKTECPKTRQQNMPLCTYIWYQ--DWKCSDCCL 328
G K+ SKSC K EC K R CT + KCS C+
Sbjct: 150 GGGKEAEKSKSCVTKEECHKKRLMCGKTCTMSAHTKCSAKCSKSCI 195
>01_06_1196 + 35322662-35324212
Length = 516
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/52 (21%), Positives = 25/52 (48%)
Frame = +2
Query: 320 CCLGDRCNYYIISGSRQNMPFNRIILGLTSVYLLSLTNFY*IYGISMLYEYD 475
CCL C + + + + + F + + LL + F+ ++ I+ L+ +D
Sbjct: 308 CCLSSLCTFCVFGWNMERLGFGNMYVHTAMFLLLCVAPFW-VFNITALHIHD 358
>01_01_0277 +
2274383-2274465,2274889-2274955,2275040-2275110,
2275550-2275667,2275755-2275828,2276094-2276149,
2276237-2276320,2276422-2276509,2276602-2276679,
2276814-2276870,2277074-2277578
Length = 426
Score = 27.5 bits (58), Expect = 6.9
Identities = 8/29 (27%), Positives = 20/29 (68%)
Frame = +3
Query: 174 VVLHIGPKGQRNNITYLKAVLTKLNALKL 260
+++H+G G+ N+ +LK V+ +L +++
Sbjct: 222 LIIHVGRFGREKNLDFLKTVMDRLPGVRI 250
>03_02_0467 +
8707777-8707892,8708030-8708096,8708190-8708260,
8708629-8708746,8708820-8708893,8709278-8709333,
8709448-8709531,8709611-8709698,8709786-8709863,
8710335-8710391,8710606-8711044
Length = 415
Score = 27.1 bits (57), Expect = 9.1
Identities = 8/29 (27%), Positives = 20/29 (68%)
Frame = +3
Query: 174 VVLHIGPKGQRNNITYLKAVLTKLNALKL 260
+++H+G G+ N+ +LK V+ +L +++
Sbjct: 233 LIIHVGRFGREKNLDFLKRVMERLPGVRI 261
>02_03_0093 -
15120951-15121344,15121658-15121953,15122119-15122419,
15123233-15123628,15123883-15124067
Length = 523
Score = 27.1 bits (57), Expect = 9.1
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +2
Query: 245 ECPKTRQQNMPLCTY 289
+CP+TR++ MPLC +
Sbjct: 53 DCPETREEAMPLCDH 67
>01_06_0596 -
30495138-30495202,30496196-30496315,30496863-30496985,
30497184-30497214
Length = 112
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 98 NNGKCVNTIKPCEHNQDVCLTEIRWGSTPYW 190
NN K + KP +HNQ + T+++ +W
Sbjct: 11 NNSKKLKKPKPWKHNQAITTTQLKQMRDEFW 41
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,098,945
Number of Sequences: 37544
Number of extensions: 264588
Number of successful extensions: 562
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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