Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320G04f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98877-12|CAB63409.1|  528|Caenorhabditis elegans Hypothetical p...    31   0.50 
U88308-11|AAB42321.1|  154|Caenorhabditis elegans Hypothetical p...    29   1.5  
Z81136-3|CAD27610.1|  196|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U00065-2|AAL27237.1|  672|Caenorhabditis elegans Prion-like-(q/n...    29   2.7  
AF324055-1|AAK01416.1|  151|Caenorhabditis elegans Ly-6-related ...    29   2.7  
AF016427-6|AAY86198.1|  177|Caenorhabditis elegans Hypothetical ...    29   2.7  
U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z66515-3|CAA91352.1|  322|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z66515-2|CAA91353.1|  543|Caenorhabditis elegans Hypothetical pr...    27   8.1  
S66936-1|AAB28820.1|  360|Caenorhabditis elegans Egl-43 protein.       27   8.1  
S66757-1|AAB28819.1|  581|Caenorhabditis elegans Egl-43 protein.       27   8.1  

>Z98877-12|CAB63409.1|  528|Caenorhabditis elegans Hypothetical
           protein Y69H2.12 protein.
          Length = 528

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +2

Query: 275 PLCTYIWYQDWKCSDCCLGDRCNY 346
           PLC   WY D  C   C GD   Y
Sbjct: 269 PLCNTSWYMDGDCKKSCGGDSAEY 292


>U88308-11|AAB42321.1|  154|Caenorhabditis elegans Hypothetical
           protein C32E8.1 protein.
          Length = 154

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 44  SFLEVLSLECYVCENQEDNNGKCVNTIKPCEH 139
           S L+ L +EC +C  Q  ++G  V  + PC H
Sbjct: 79  SDLKTLPIECEICAVQYGDSGMTVPRVLPCGH 110


>Z81136-3|CAD27610.1|  196|Caenorhabditis elegans Hypothetical
           protein W02B8.5 protein.
          Length = 196

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 323 CLGDRCNYYIISGSRQNMPFNRIILGLTSV 412
           CLGDRCN  I + + Q++    I++ L+S+
Sbjct: 165 CLGDRCNSAISTSNCQSLSVLAILVALSSL 194


>U00065-2|AAL27237.1|  672|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 25
           protein.
          Length = 672

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
 Frame = +2

Query: 101 NGKCVNTI--KPCEHNQDVCLTEIRWGSTPYWSQGAKKQYYISKS-C-SNKTECPKTRQQ 268
           N  CV+T     C  NQ VC++   +      SQ    Q  +S S C S+  +CP+  QQ
Sbjct: 372 NNICVSTFCSVSCSTNQ-VCISNQCYNYVSIGSQCVGSQQCLSNSQCISSICQCPQGTQQ 430

Query: 269 NMPLCT 286
           +  +CT
Sbjct: 431 SNGVCT 436


>AF324055-1|AAK01416.1|  151|Caenorhabditis elegans Ly-6-related
           protein HOT-3 protein.
          Length = 151

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 323 CLGDRCNYYIISGSRQNMPFNRIILGLTSV 412
           CLGDRCN  I + + Q++    I++ L+S+
Sbjct: 120 CLGDRCNSAISTSNCQSLSVLAILVALSSL 149


>AF016427-6|AAY86198.1|  177|Caenorhabditis elegans Hypothetical
           protein F32D1.11 protein.
          Length = 177

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 62  SLECYVCENQEDNNGKCVNTIKPCEHN 142
           + ECY C  +   NG C++    CE++
Sbjct: 17  AFECYTCNEELTKNGPCIDRKTICENS 43


>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical
           protein F40H6.5 protein.
          Length = 1288

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 65  LECYVCENQEDNNGKCVNTIKPCEHNQDVCLTEIRW 172
           L+C + EN  D NG+ VN     E   ++ +T   W
Sbjct: 587 LDCNIIENYGDLNGRMVNFANVMEVGDNITITGHIW 622


>Z66515-3|CAA91352.1|  322|Caenorhabditis elegans Hypothetical
           protein R53.3b protein.
          Length = 322

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 18/69 (26%), Positives = 29/69 (42%)
 Frame = +2

Query: 116 NTIKPCEHNQDVCLTEIRWGSTPYWSQGAKKQYYISKSCSNKTECPKTRQQNMPLCTYIW 295
           N   P  H+    ++  +  S+P  S G+ K  Y  K C  +   P++      L T+  
Sbjct: 190 NPAVPSPHSFLRAMSGAKASSSPSSSSGSGKDRYTCKFC--QKVFPRSANLTRHLRTHTG 247

Query: 296 YQDWKCSDC 322
            Q +KC  C
Sbjct: 248 EQPYKCQYC 256


>Z66515-2|CAA91353.1|  543|Caenorhabditis elegans Hypothetical
           protein R53.3a protein.
          Length = 543

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 18/69 (26%), Positives = 29/69 (42%)
 Frame = +2

Query: 116 NTIKPCEHNQDVCLTEIRWGSTPYWSQGAKKQYYISKSCSNKTECPKTRQQNMPLCTYIW 295
           N   P  H+    ++  +  S+P  S G+ K  Y  K C  +   P++      L T+  
Sbjct: 411 NPAVPSPHSFLRAMSGAKASSSPSSSSGSGKDRYTCKFC--QKVFPRSANLTRHLRTHTG 468

Query: 296 YQDWKCSDC 322
            Q +KC  C
Sbjct: 469 EQPYKCQYC 477


>S66936-1|AAB28820.1|  360|Caenorhabditis elegans Egl-43 protein.
          Length = 360

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 18/69 (26%), Positives = 29/69 (42%)
 Frame = +2

Query: 116 NTIKPCEHNQDVCLTEIRWGSTPYWSQGAKKQYYISKSCSNKTECPKTRQQNMPLCTYIW 295
           N   P  H+    ++  +  S+P  S G+ K  Y  K C  +   P++      L T+  
Sbjct: 190 NPAVPSPHSFLRAMSGAKASSSPSSSSGSGKDRYTCKFC--QKVFPRSANLTRHLRTHTG 247

Query: 296 YQDWKCSDC 322
            Q +KC  C
Sbjct: 248 EQPYKCQYC 256


>S66757-1|AAB28819.1|  581|Caenorhabditis elegans Egl-43 protein.
          Length = 581

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 18/69 (26%), Positives = 29/69 (42%)
 Frame = +2

Query: 116 NTIKPCEHNQDVCLTEIRWGSTPYWSQGAKKQYYISKSCSNKTECPKTRQQNMPLCTYIW 295
           N   P  H+    ++  +  S+P  S G+ K  Y  K C  +   P++      L T+  
Sbjct: 411 NPAVPSPHSFLRAMSGAKASSSPSSSSGSGKDRYTCKFC--QKVFPRSANLTRHLRTHTG 468

Query: 296 YQDWKCSDC 322
            Q +KC  C
Sbjct: 469 EQPYKCQYC 477


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,092,609
Number of Sequences: 27780
Number of extensions: 264492
Number of successful extensions: 785
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)