Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320G03f
         (370 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0449 - 3229260-3229365,3230264-3230396,3230536-3230625,323...    27   3.5  
05_04_0137 + 18343106-18344686                                         27   4.6  
02_01_0769 - 5740652-5740759,5740851-5740936,5740994-5741056,574...    27   4.6  

>02_01_0449 -
           3229260-3229365,3230264-3230396,3230536-3230625,
           3231097-3231309,3232317-3232407,3232519-3232707,
           3232810-3232920,3233018-3233110
          Length = 341

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = +2

Query: 23  KMYSMLIYETVNDDERDTSERSRKNARTRLSVTFGRTRRFDVFAVCARAFRILYI 187
           KM  + ++ TV D ERDT E+ R           G T   D     ARA+R+ Y+
Sbjct: 237 KMEVVPVFITV-DPERDTVEQVRDYVNEFHPNLIGLTGTTDEIRKVARAYRVYYM 290


>05_04_0137 + 18343106-18344686
          Length = 526

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -2

Query: 231 LLYILRFEISNIIIFMYKMRNARAHTAK-TSKRRVRPNVTESRVRAFLRER 82
           L Y+L F ++ +++F +  R  R+  AK T+  R  PN        F+R R
Sbjct: 6   LAYVLLFLVTAVLLF-HLRRGGRSAPAKLTTAHRPHPNPVLGNTVEFIRNR 55


>02_01_0769 -
           5740652-5740759,5740851-5740936,5740994-5741056,
           5741887-5741935,5742180-5742332
          Length = 152

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +2

Query: 17  INKMYSMLIYETVND--DERDTSERSRKNARTRLSVTFGRTRRFDVFAVCA 163
           + K YS +  E +    D +D S RSR   + ++ +  G+T +FD     A
Sbjct: 86  VEKTYSKICAEIMTSTVDVKDDS-RSRPMQKAKIEIVLGKTDKFDELMAAA 135


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,890,719
Number of Sequences: 37544
Number of extensions: 123865
Number of successful extensions: 252
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)