Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320G03f
         (370 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026209-4|AAW88411.1|  317|Caenorhabditis elegans Serpentine re...    34   0.037
Z75549-7|CAD60423.1|  306|Caenorhabditis elegans Hypothetical pr...    28   1.8  
AC024776-1|AAK68468.1|  338|Caenorhabditis elegans Hypothetical ...    27   5.5  
Z71265-6|CAA95837.1|  399|Caenorhabditis elegans Hypothetical pr...    26   7.3  
Z71258-17|CAA95787.1|  399|Caenorhabditis elegans Hypothetical p...    26   7.3  
U30248-1|AAC13874.1|  399|Caenorhabditis elegans transcription f...    26   7.3  
U13614-1|AAA21347.1|  399|Caenorhabditis elegans protein ( Caeno...    26   7.3  

>AF026209-4|AAW88411.1|  317|Caenorhabditis elegans Serpentine
           receptor, class h protein2, isoform b protein.
          Length = 317

 Score = 33.9 bits (74), Expect = 0.037
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = -2

Query: 252 PPCFICLLLYILRFEISNIIIFMYKMRNARAHTAKT 145
           P CF+ L++ ++   ++ I IF+Y+M  A  HTA T
Sbjct: 90  PECFLILVVILIYNGLACIFIFLYRMEVASKHTAPT 125


>Z75549-7|CAD60423.1|  306|Caenorhabditis elegans Hypothetical
           protein T19C4.8 protein.
          Length = 306

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -1

Query: 310 SKEKLTDVLVFLTCVCVRCTTVFYMF-IIIYFEIRNFEY 197
           SK  + D+   L+C  V CT V  +   I Y +IR F +
Sbjct: 167 SKYNIKDIFTTLSCFMVSCTVVTMISNFISYLKIRTFPF 205


>AC024776-1|AAK68468.1|  338|Caenorhabditis elegans Hypothetical
           protein Y41D4B.18 protein.
          Length = 338

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +2

Query: 56  NDDERDTSERSRKNARTRLSVTFGRTRRFDVFAVCARAFRILYINIIIFEISN 214
           ND + + + +S   A    S + G T  F+       + R LYI +I F+IS+
Sbjct: 64  NDTQSERAAQSLIFANPIKSWSSGNTYFFNTIEPMQYSLRALYIRVISFQISH 116


>Z71265-6|CAA95837.1|  399|Caenorhabditis elegans Hypothetical
           protein M05B5.5a protein.
          Length = 399

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +2

Query: 47  ETVNDDERDTSERSRKNARTRLSV 118
           E+++DD +DT  RS+ NAR R+ V
Sbjct: 293 ESMSDD-KDTDRRSQNNARERVRV 315


>Z71258-17|CAA95787.1|  399|Caenorhabditis elegans Hypothetical
           protein M05B5.5a protein.
          Length = 399

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +2

Query: 47  ETVNDDERDTSERSRKNARTRLSV 118
           E+++DD +DT  RS+ NAR R+ V
Sbjct: 293 ESMSDD-KDTDRRSQNNARERVRV 315


>U30248-1|AAC13874.1|  399|Caenorhabditis elegans transcription
           factor E12/47 homolog protein.
          Length = 399

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +2

Query: 47  ETVNDDERDTSERSRKNARTRLSV 118
           E+++DD +DT  RS+ NAR R+ V
Sbjct: 293 ESMSDD-KDTDRRSQNNARERVRV 315


>U13614-1|AAA21347.1|  399|Caenorhabditis elegans protein (
           Caenorhabditis elegansN2 basic-helix-loop-helix
           transcription factor E12/47homolog mRNA, complete cds.
           ).
          Length = 399

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +2

Query: 47  ETVNDDERDTSERSRKNARTRLSV 118
           E+++DD +DT  RS+ NAR R+ V
Sbjct: 293 ESMSDD-KDTDRRSQNNARERVRV 315


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,149,962
Number of Sequences: 27780
Number of extensions: 121129
Number of successful extensions: 412
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)