Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320G02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    27   1.7  
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    26   3.9  
SPBC3B9.17 |isa2||iron-sulfur protein Isa2|Schizosaccharomyces p...    25   6.8  
SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb...    25   6.8  
SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease Pac1|S...    25   6.8  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    25   6.8  

>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = -3

Query: 354  MYLVADRRSVYTNKR*VYFK*FRTHTVF*IQDIFFWCKFNYNMLICIFL*NAR*FN 187
            +Y +    S+Y   R +    F T TV+    ++FW    + ++IC F+ N   F+
Sbjct: 1411 LYSLYTGSSIYLGSRLIMMLLFGTMTVWTTHYVYFWVTM-FALVICPFIYNPHQFS 1465


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 421 RCLYRCSWSPL*ADILISDHLLYVS 347
           R L    W+P+ A+ +I  HLLY++
Sbjct: 204 RSLALSGWNPVPAEFVIQGHLLYLT 228


>SPBC3B9.17 |isa2||iron-sulfur protein Isa2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 205

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +3

Query: 99  RSCRLSHKRETMSRKISPRV 158
           RSCR+  K  T++++I P++
Sbjct: 44  RSCRIDAKSNTLTKEIFPKI 63


>SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 370 SDHLLYVSCRRQTFRLHQ*KVGLFQIISH 284
           SD+L+ V C+R+T R  + K G  Q++ H
Sbjct: 442 SDNLMPVECQRETARCLE-KAGNKQVVYH 469


>SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease
           Pac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 220 DQHIVIKFTPEKDVLDLKNSVSAKLFEIDLPFIGVDG 330
           D+ +V+ ++ EKD L     V A  FE  L  + +DG
Sbjct: 225 DKTLVLSYSAEKDQLRKSQKVIADTFEAYLGALILDG 261


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 332 VPSTPIKGRSISNNFALTLFFKSKTSFSGVNLITIC 225
           V +TP+K  S+SN +   LFF   +S +    +  C
Sbjct: 409 VKTTPMKCSSLSNIYTSDLFFAISSSNTNEGDVVCC 444


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,039,358
Number of Sequences: 5004
Number of extensions: 42694
Number of successful extensions: 103
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)