Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320G02f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0524 + 3892340-3894625,3894995-3895109,3895204-3895298,389...    28   4.0  
02_01_0073 - 509377-509425,510200-510270,510420-510539,510684-51...    28   4.0  
01_06_1486 - 37709159-37709377,37709558-37709821,37709903-377099...    28   4.0  
01_03_0003 + 11509530-11512772                                         28   4.0  

>07_01_0524 +
           3892340-3894625,3894995-3895109,3895204-3895298,
           3895929-3896167,3896524-3896610,3896967-3897066,
           3897908-3898115,3898224-3899422
          Length = 1442

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +1

Query: 343 DKIHTEDDQKSGCPLKAGTNYIYKDTFPILSIYPSIQAEVTWAL 474
           D +  E +  + C    G   IYK    +L +  +I+A  +W+L
Sbjct: 812 DSVKAESNSSTDCFCSPGCRKIYKHLRKLLGVKNAIEAGFSWSL 855


>02_01_0073 -
           509377-509425,510200-510270,510420-510539,510684-510769,
           510843-510915,510996-511718,513752-514081,514124-514210,
           514494-515250,515336-515399,515477-515609,515702-515801,
           515952-516088,516195-516341,516428-516478,517083-517148
          Length = 997

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +1

Query: 256 DVLDLKNSVSAKLFEIDLPFIGVDGTSVCDKIHTEDDQKSGCPLKAGTNYIYKDT 420
           D+LD  NSV  K  E +L        +   +++ E  +KS C   +  NYIY  T
Sbjct: 362 DLLDKVNSVVNKETEQELGGSRCSCFTESGEVNNETSRKSACREDSNDNYIYCPT 416


>01_06_1486 -
           37709159-37709377,37709558-37709821,37709903-37709995,
           37710387-37710581,37710665-37710763,37710884-37711132,
           37711264-37711467,37711543-37711602,37711731-37711913,
           37712382-37712999,37713101-37713169,37713275-37713853
          Length = 943

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +2

Query: 338 SATRYIQKMIRNQDVRSKRGPTTSIKTPFLFSVFTH 445
           S +R +  ++  +D++SKR P+  +K+P  ++ F H
Sbjct: 768 SDSRSLATLLLIRDIQSKRLPSKELKSPLRYNGFCH 803


>01_03_0003 + 11509530-11512772
          Length = 1080

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +1

Query: 121  NVRQCPGKSVPELSKAVQLHECIKLP 198
            N  +CP  ++P   + +Q+++C+ LP
Sbjct: 988  NGSECPNSTLPARLEVIQIYDCMSLP 1013


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,381,956
Number of Sequences: 37544
Number of extensions: 244268
Number of successful extensions: 505
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)