Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS320F10f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|... 148 4e-37
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|... 76 4e-15
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe... 71 1e-13
SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|ch... 31 0.10
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 29 0.56
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 27 1.7
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 27 1.7
SPCC338.02 |mug112||sequence orphan|Schizosaccharomyces pombe|ch... 27 2.2
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c... 26 3.9
SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 25 5.2
SPBPB2B2.16c |||MFS family membrane transporter |Schizosaccharom... 25 5.2
SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 5.2
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 25 6.8
SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr... 25 6.8
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo... 25 9.0
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 25 9.0
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 9.0
>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 767
Score = 148 bits (359), Expect = 4e-37
Identities = 77/144 (53%), Positives = 107/144 (74%), Gaps = 1/144 (0%)
Frame = -3
Query: 513 TGIKGDFLIQVLQILLKAKLLVCQEDEAELGE-NSVVDLYSGYKNKKLRVNINIPLKTEL 337
TG+ DFL +L I LKAK+L+ +++ +LG+ NS + ++ KK+RV +N+P+++E
Sbjct: 627 TGLSTDFLTGILNIFLKAKVLLLGDND-KLGDPNSTYKINENFRMKKIRVQLNLPIRSEQ 685
Query: 336 KVEQEATHKHIEEDRKMLIQAAIVRIMKTRKTLKHQHLVVEVLNQLSSRFKPRVPVIKKC 157
K E THK IEEDRK+L+Q+AIVRIMK R+TLKH LV E ++Q+ SRF P+V IK+C
Sbjct: 686 KQESLETHKTIEEDRKLLLQSAIVRIMKARRTLKHVVLVKETIDQIKSRFTPKVSDIKQC 745
Query: 156 IDILIEKEYLERTEGEKDTYSYLA 85
ID+LIEKEYLER +G +D Y YLA
Sbjct: 746 IDMLIEKEYLER-QG-RDEYIYLA 767
>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 785
Score = 75.8 bits (178), Expect = 4e-15
Identities = 50/149 (33%), Positives = 77/149 (51%), Gaps = 4/149 (2%)
Frame = -3
Query: 519 QHTGIKGDFLIQVLQILLKAKLLVCQEDEAELGENSVVDLY--SGYKNKKLRVNINIPLK 346
+ T I+ L + LQ L AK + +D N+ Y + + R+ I+ +
Sbjct: 637 EKTNIEVGDLKRNLQSLACAKYKILLKDPKGREVNAGDKFYFNENFVSNLARIKISTVAQ 696
Query: 345 TELK--VEQEATHKHIEEDRKMLIQAAIVRIMKTRKTLKHQHLVVEVLNQLSSRFKPRVP 172
T ++ E++ T + ++E RK A IVR+MK RK +H L+ EV QL+ RF P
Sbjct: 697 TRVEDDSERKRTLEKVDESRKHQADACIVRVMKDRKVCEHNQLMAEVTRQLNPRFHPSPM 756
Query: 171 VIKKCIDILIEKEYLERTEGEKDTYSYLA 85
+IK+ I+ LIE+EYL+R Y YLA
Sbjct: 757 MIKRRIEALIEREYLQRQADNGRIYEYLA 785
>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 70.5 bits (165), Expect = 1e-13
Identities = 37/98 (37%), Positives = 56/98 (57%)
Frame = -3
Query: 390 YKNKKLRVNINIPLKTELKVEQEATHKHIEEDRKMLIQAAIVRIMKTRKTLKHQHLVVEV 211
+ +K RV IN E + E + + DR+ +QA+IVR+MK ++ +KH LV V
Sbjct: 635 FTDKLYRVKINQIYLKEERQENSDVQEQVVRDRQFELQASIVRVMKQKEKMKHDDLVQYV 694
Query: 210 LNQLSSRFKPRVPVIKKCIDILIEKEYLERTEGEKDTY 97
+N + R P V +K I+ L+EKEYLER + + TY
Sbjct: 695 INNVKDRGIPLVSDVKTAIEKLLEKEYLEREDNDIYTY 732
>SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 234
Score = 31.1 bits (67), Expect = 0.10
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +3
Query: 342 PSSTVCLYSRAAFCSCTPSRDRQPSSRQAQPRPLDTPTVSP 464
P+STV ++ + SC P+ DR S A R +T T SP
Sbjct: 146 PNSTVLTFTAVPYDSCLPAPDRHTPS-SASSRASETGTTSP 185
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 28.7 bits (61), Expect = 0.56
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 5/102 (4%)
Frame = -3
Query: 318 THKHIEEDRKMLIQAAIVRIMKTRKT----LKHQHLVVEVLNQLSSRFKPRVPVIKKCID 151
T KH+EE + I +V+I + +K+ L H ++E N+L + V+ K D
Sbjct: 737 TSKHLEEFSEKFIPKKLVKIPRLQKSYAKGLITGHGIIEDYNRLYKELNDQKEVLIKFRD 796
Query: 150 ILIEKEYLERTEGEKD-TYSYLA*SRHSQEERLCVIK*YRNI 28
LI L + E D T S ++Q E I YR +
Sbjct: 797 RLIHLMKLPLLDQESDPTGDEYEESLNAQSEISYCIDVYRQM 838
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 27.1 bits (57), Expect = 1.7
Identities = 9/21 (42%), Positives = 17/21 (80%)
Frame = -3
Query: 396 SGYKNKKLRVNINIPLKTELK 334
SGYK+++L ++ ++PL T +K
Sbjct: 1488 SGYKSRRLAIDYSVPLVTNVK 1508
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/52 (23%), Positives = 28/52 (53%)
Frame = -3
Query: 390 YKNKKLRVNINIPLKTELKVEQEATHKHIEEDRKMLIQAAIVRIMKTRKTLK 235
+++ K + +P T L ++ E T HI ++ + ++++ I+ KTL+
Sbjct: 621 FQSTKSTASFQLPGWTSLGMDLENTKLHIHQEEQRVLKSITDEIVSHHKTLR 672
>SPCC338.02 |mug112||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 125
Score = 26.6 bits (56), Expect = 2.2
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 381 CSCTPSRDRQPSSRQAQPRPLDTPTVS 461
C+C P R ++ S R P LDT T+S
Sbjct: 26 CTCFPKRKKEASERSCFPF-LDTETIS 51
>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1142
Score = 25.8 bits (54), Expect = 3.9
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 196 RQLVEDFHH*VLMLQGLARFHYPYYGGLYKHLSVLLNVFV 315
R L+ F V+ L +F Y +YG Y +S L V +
Sbjct: 739 RTLLASFPVVVISLAAYNQFRYFHYGSAYLSMSAALEVMI 778
>SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 485
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +2
Query: 242 VLRVFIIRTMAACISIFLSSSMCLCVASCSTLSSVF 349
++++ I+ +M ISI LS + +CVA C T+ S++
Sbjct: 254 LIKLLILLSMKKPISILLSQPILICVA-C-TIGSIY 287
>SPBPB2B2.16c |||MFS family membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +2
Query: 242 VLRVFIIRTMAACISIFLSSSMCLCVASCSTLSSVF 349
++++ I+ +M ISI LS + +CVA C T+ S++
Sbjct: 254 LIKLLILLSMKKPISILLSQPILICVA-C-TIGSIY 287
>SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +2
Query: 242 VLRVFIIRTMAACISIFLSSSMCLCVASCSTLSSVF 349
++++ I+ +M ISI LS + +CVA C T+ S++
Sbjct: 254 LIKLLILLSMKKPISILLSQPILICVA-C-TIGSIY 287
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = -3
Query: 141 EKEYLERTEGEKDTYSYLA*SRHSQEERLCVIK 43
E+E + +TE +K++ S + S S+EE V+K
Sbjct: 123 EEEVIVKTEEKKESSSESSSSSESEEEEEAVVK 155
>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
2|||Manual
Length = 539
Score = 25.0 bits (52), Expect = 6.8
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = -3
Query: 372 RVNINIPLKTELKVEQEATHKHIEEDRKM 286
R N+N L+ ++ VE+EA ++ +++M
Sbjct: 47 RRNLNAVLQNDIDVEEEADQSQVQMEQQM 75
>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
es pombe|chr 2|||Manual
Length = 372
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 289 LSVLLNVFVCSLLFNFKLRLQRYVY 363
LS++L + C LL+N +QR VY
Sbjct: 22 LSIILLGWQCVLLYNHSPEIQRSVY 46
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 24.6 bits (51), Expect = 9.0
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +3
Query: 339 APSSTVCLYSRAAFCSCTPSRDRQP-SSRQAQPRPLDTPTVSP 464
AP+S V YS A T S P SS PRP D P++ P
Sbjct: 401 APTSNVPAYSTPA--RPTESPPPPPISSSSTTPRPDDKPSLPP 441
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -3
Query: 177 VPVIKKCIDILIEKEYLE 124
+P + K D+L EK YLE
Sbjct: 65 IPFVDKIFDVLREKSYLE 82
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,106,859
Number of Sequences: 5004
Number of extensions: 42355
Number of successful extensions: 172
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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