Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320F10f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    23   1.4  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    23   1.4  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   3.3  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   4.4  

>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = -3

Query: 420 ENSVVDLYSGYKNKKLRVNINIPLKTELKVEQEATHKHIEEDRKMLIQAAIVRIMKTRK 244
           E+S +DL S  K ++L+      L     ++QE   +H    +KM+++  + RI +  K
Sbjct: 21  EDSEIDLRSRTKEERLQHRREAWL-----IQQEREREHQRLTKKMILEYELRRIREIEK 74


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 399 YSGYKNKKLRVNIN 358
           Y+ Y NKKL  NIN
Sbjct: 318 YNNYNNKKLYYNIN 331


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = -3

Query: 420 ENSVVDLYSGYKNKKLRVNINIPLKTELKVEQEATHKHIEEDRKMLIQAAIVRIMKTRK 244
           E++ +DL S  K ++L+      L     ++QE   +H    +KM+++  I RI +  K
Sbjct: 21  EDNKIDLRSRTKEERLQHRREAWL-----IQQEREREHQRLMKKMILEYEIRRIREIEK 74


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -3

Query: 303 EEDRKMLIQAAIVRIMKTRKTLKHQHLVVEVLNQLSSR 190
           E DRK L Q  I+R    R + +    +V+  +  SSR
Sbjct: 5   ECDRKSLSQRKIIRSRSRRYSKRFSSSIVDRRSPSSSR 42


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,496
Number of Sequences: 438
Number of extensions: 3130
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)