Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320F09f
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600516-1|AAT11864.1|  143|Tribolium castaneum optomotor-blind-...    23   1.2  
AY600515-1|AAT11863.1|  134|Tribolium castaneum optomotor-blind-...    23   1.2  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   2.2  
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    23   2.2  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   8.7  

>AY600516-1|AAT11864.1|  143|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 143

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 90  KSIPIAGILNINYCRYFFHNKQYITRRK 7
           K I +  I+  + CRY FHN +++   K
Sbjct: 18  KYILLMDIVAADDCRYKFHNSRWMVAGK 45


>AY600515-1|AAT11863.1|  134|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 134

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 90  KSIPIAGILNINYCRYFFHNKQYITRRK 7
           K I +  I+  + CRY FHN +++   K
Sbjct: 18  KYILLMDIVAADDCRYKFHNSRWMVAGK 45


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
 Frame = -2

Query: 502 CRNCDYRIPHCTS-QIGFRRLLH 437
           CR+C Y   +C S +I  RR  H
Sbjct: 289 CRDCSYATKYCHSLKIHLRRYGH 311


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
 Frame = -2

Query: 502 CRNCDYRIPHCTS-QIGFRRLLH 437
           CR+C Y   +C S +I  RR  H
Sbjct: 47  CRDCSYATKYCHSLKIHLRRYGH 69


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 75  AGILNINYCRYFFHNKQYITRRK 7
           AG   INY   F   KQY+ +++
Sbjct: 346 AGFFPINYTLVFSVLKQYVMQQQ 368


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,455
Number of Sequences: 336
Number of extensions: 2515
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)