Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320F08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces po...    31   0.14 
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce...    30   0.18 
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    29   0.56 
SPCC24B10.12 |||CGI121 family protein|Schizosaccharomyces pombe|...    28   0.73 
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon...    28   0.73 
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    27   1.7  
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ...    26   3.9  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    25   6.8  
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ...    25   6.8  
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    25   6.8  
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p...    25   9.0  
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    25   9.0  

>SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 433

 Score = 30.7 bits (66), Expect = 0.14
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 222 IEKRIEDSLRENWRDNWNWTVKDGASILQ 308
           I +RI   L E W+D W W   D AS L+
Sbjct: 386 IAQRILGDLSEEWKDAWRWREDDKASELK 414


>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 30.3 bits (65), Expect = 0.18
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +2

Query: 356 PASAVPVALRRSPITTSMPKQNTSTQEAKVSSPESTKTQKRITDFLKPR 502
           P S +P AL R P++ S+P +    +   +S PES  T    T  +K R
Sbjct: 418 PTSTMPEALPREPLSFSLP-EKAPEKATNISIPESAPTTAGSTCKVKVR 465


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +2

Query: 329 IQRFAWQLVPASAVPVALRRSPITTSMPKQNTSTQEAKVSSPESTKTQKRITDFLKPRK 505
           ++ FA+      + P    +   +  + ++NT  + +   SP  TK  K ITD LKP K
Sbjct: 48  LENFAYNASTEISSPKISEKKHSSLPIKRKNTFNESSTSFSP-FTKAHKEITDDLKPDK 105


>SPCC24B10.12 |||CGI121 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 174

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = -1

Query: 374 PELQTLVLIATRISECPVKVVHLQNRSPIFDCPIPIVSPILSQRIFYSLLYR 219
           PE Q  V +   +S C      L +++PI+D      + IL ++  YS + R
Sbjct: 7   PETQVHVFVYENVSNCAAIHEQLISQNPIYDYAFLDAATILYKKQVYSAIIR 58


>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
           of oxoglutarate dehydrogenase complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 17/70 (24%), Positives = 33/70 (47%)
 Frame = +2

Query: 311 EQPLPGIQRFAWQLVPASAVPVALRRSPITTSMPKQNTSTQEAKVSSPESTKTQKRITDF 490
           E+P+P +     +  P+S  P    + P  +S   +   ++  K S P++T+T  R + F
Sbjct: 158 EKPMPDLGAEQKESAPSSTKPAPDAKEPEFSSPKPKPAKSEPVKQSKPKATET-ARPSSF 216

Query: 491 LKPRKRLSGN 520
            +   R+  N
Sbjct: 217 SRNEDRVKMN 226


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -1

Query: 434 PGWMYSVSASRL*SVTFLTLPELQTLVLIATRISECPVKVVHLQNRSPI 288
           PGW YSV +S   +     L +  TL L +T      +++  LQ R P+
Sbjct: 664 PGWWYSVESSST-AYLLKQLEKSCTLALKSTPEMRHKLRIAALQQRFPV 711


>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 546

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 47  SWMLIGVVFRCLDSIEMSALSVRAPGLQATTTVLDTR 157
           SW+ I +V +    + + ALSV APG Q+     D R
Sbjct: 109 SWVQI-MVAKIWTGLSIGALSVLAPGFQSEVAPADLR 144


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 356 PASAVPVALRRSPITTSMPKQNTSTQEAKVSSPES 460
           PASA P+  +  PI +S+P    +   A V SP S
Sbjct: 154 PASAPPIPSKAPPIPSSLPP--PAQPAAPVKSPPS 186


>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 878

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 347 QLVPASAVPVALRRSPITTSMPKQNTSTQE 436
           QLV  S   V   RS  T + P+Q +S QE
Sbjct: 194 QLVTISLAGVRCPRSTFTATSPEQTSSEQE 223


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = +2

Query: 14  IIIKYLKVKTTS---WMLIGVVFRCLDSIEMSALSVRAPGLQATTTVLDTRSLRVRGVTA 184
           I+  YLK++      W+   V+   L S++ +   VRA G++ +   L      +  V A
Sbjct: 219 IVSLYLKMRRLGSKFWLFFSVLLSTLFSVQFAMTLVRASGVRISLVSLIESLPFLINVVA 278

Query: 185 LD 190
           LD
Sbjct: 279 LD 280


>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 531

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 47  SWMLIGVVFRCLDSIEMSALSVRAPGLQATT 139
           SW+ I +V +    I + ALSV APG Q+ T
Sbjct: 113 SWVQI-MVAKIWTGIGIGALSVLAPGYQSET 142


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 419 NTSTQEAKVSSPESTKTQKRITDFLKPRKRLSGN 520
           N     A+   PE+ K+ +R TD  + RKR   N
Sbjct: 9   NFVVDNAQSRKPEALKSSRRWTDRARDRKRQKRN 42


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,115,973
Number of Sequences: 5004
Number of extensions: 40864
Number of successful extensions: 173
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)