Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS320F08f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0076 - 19830482-19831258,19837352-19837613,19838073-19838485 31 0.56
11_03_0068 + 9564354-9565180,9566658-9568704 30 0.98
08_02_0230 - 14572854-14574632 30 0.98
12_02_0796 + 23224357-23224427,23225714-23225810,23226335-232271... 29 3.0
11_06_0132 - 20431122-20431477,20431739-20433758 28 4.0
10_08_0345 - 16985194-16985260,16985407-16985610,16987780-16988093 28 4.0
08_01_1084 - 11120719-11120950,11121035-11121133,11122446-111228... 28 4.0
06_03_0399 - 20403488-20405092 28 4.0
05_03_0076 + 8164466-8164511,8164643-8164698,8165529-8165867,816... 28 4.0
04_04_1399 - 33249210-33249359,33249521-33249597,33249735-332498... 28 4.0
04_03_0316 + 14261942-14262506,14262710-14263134 28 4.0
12_02_0451 - 19179592-19179648,19179745-19179879,19180214-191802... 28 5.2
08_02_1237 + 25475219-25475916,25476127-25476320,25476407-254773... 28 5.2
02_05_0442 - 29044736-29046604 28 5.2
08_02_0731 - 20483518-20484154,20484182-20484375,20484541-204846... 27 6.9
03_06_0037 + 31222963-31223886,31225172-31225786 27 6.9
03_02_0220 - 6531255-6532667 27 6.9
01_01_0012 + 71903-72935,73468-73981,74619-76008 27 6.9
09_02_0517 + 10139859-10140245 27 9.1
07_01_0276 + 2028983-2029070,2030084-2030151,2030317-2031246,203... 27 9.1
04_04_0138 + 23067885-23068245,23068393-23068634 27 9.1
03_02_0707 + 10569261-10571276 27 9.1
02_01_0521 + 3768072-3768239,3768280-3768337,3769197-3769659,376... 27 9.1
>11_06_0076 - 19830482-19831258,19837352-19837613,19838073-19838485
Length = 483
Score = 31.1 bits (67), Expect = 0.56
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +2
Query: 143 VLDTRSLRVRGVTALDGVRRNLFGCTDREENRRFVERELARQLELDSQRW 292
+ D R + ALD + R CT + NRR +E+A LE+ W
Sbjct: 423 MFDERITEEEDIHALDDIGRLALRCTHPKTNRRPTMKEVAGHLEMIRSSW 472
>11_03_0068 + 9564354-9565180,9566658-9568704
Length = 957
Score = 30.3 bits (65), Expect = 0.98
Identities = 15/26 (57%), Positives = 17/26 (65%)
Frame = -1
Query: 377 LPELQTLVLIATRISECPVKVVHLQN 300
L ELQTL L TRI E P +V L+N
Sbjct: 624 LQELQTLELQRTRIKELPKSIVRLKN 649
>08_02_0230 - 14572854-14574632
Length = 592
Score = 30.3 bits (65), Expect = 0.98
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Frame = +2
Query: 5 FRVIIIK--YLKVKTTSWMLIGVVFRCLDSIEMSALSVRAPGLQATTTVLD-TRSLRVRG 175
FRV+ I LKV TT W+ + + CL ++ + +VR LQ LR+
Sbjct: 184 FRVLDIAGCCLKVTTTEWLWDWIAYPCLTTLRLRRCTVRLCDLQKVILAAPRLAELRLES 243
Query: 176 VTALD 190
VT D
Sbjct: 244 VTFSD 248
>12_02_0796 +
23224357-23224427,23225714-23225810,23226335-23227146,
23227593-23227619,23227620-23229624
Length = 1003
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -1
Query: 377 LPELQTLVLIATRISECPVKVVHLQN 300
L LQTL L++T++ + P +V LQN
Sbjct: 683 LQHLQTLDLVSTKLRKSPKSIVRLQN 708
>11_06_0132 - 20431122-20431477,20431739-20433758
Length = 791
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = -1
Query: 338 ISECPVKVVHLQNRSPIFDCPIPIVSPILSQRIFYSLLYRYSRINS 201
+ C + H + + + + +V+ +L +FY LL RY +I S
Sbjct: 416 LPRCTSQAPHRRQKFLVIPIVVSLVATLLLLLLFYKLLARYKKIKS 461
>10_08_0345 - 16985194-16985260,16985407-16985610,16987780-16988093
Length = 194
Score = 28.3 bits (60), Expect = 4.0
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +2
Query: 194 VRRNLFGCTDREENRRFVERELARQLELDSQRWGFDFANEQPLPGIQRFAW 346
VR N+ + E E + RQ +D ++ FD N+ PLPG RF W
Sbjct: 144 VRHNIIPASAELEAFFAAEEQRQRQAFID--KYNFDPVNDCPLPG--RFEW 190
>08_01_1084 -
11120719-11120950,11121035-11121133,11122446-11122849,
11123559-11124197
Length = 457
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +2
Query: 359 ASAVPVALRRSPITTSMPKQNTSTQEAKVSSPESTKT 469
A+ +PV LRRS T +P +TST + +SP + ++
Sbjct: 59 ATPIPVVLRRSLRTRGLP-PSTSTSSSSAASPPAPES 94
>06_03_0399 - 20403488-20405092
Length = 534
Score = 28.3 bits (60), Expect = 4.0
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3
Query: 258 WRDNWNWTVKDGASIL 305
W W+W +KDGA +L
Sbjct: 384 WETTWSWLLKDGAGLL 399
>05_03_0076 + 8164466-8164511,8164643-8164698,8165529-8165867,
8165938-8166012,8166674-8166846,8168697-8168795,
8169002-8169161,8169321-8169464,8169551-8169723,
8169796-8169991,8170061-8170258,8170864-8171016,
8171838-8171959,8172037-8172136,8172221-8172316,
8172400-8172530,8173717-8173819,8174373-8174555,
8174632-8174724,8174818-8174853,8175672-8175773,
8176310-8176472,8176557-8176678,8176994-8177158,
8177667-8177849,8178679-8178831,8179136-8179288,
8179373-8179444,8179530-8179664,8179739-8179800,
8179999-8180096,8180628-8180737,8180832-8181005,
8181092-8181157,8181847-8181915,8181989-8182099,
8182418-8182558,8182638-8182766,8182864-8183029,
8183174-8183388,8184883-8185089,8185501-8185572,
8185897-8186010,8186090-8186281,8186489-8186569,
8186654-8186728,8186812-8186878,8187292-8187452,
8187943-8188116,8188209-8188337,8188421-8188504,
8188589-8188650,8188728-8188800,8189008-8189142,
8189790-8189960,8190054-8190319,8190440-8190458
Length = 2448
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 183 LSMVSEGI-YSAVPIEKRIEDSLRENWRDNWNWTVK 287
LS + E I Y +P+E I DS RE R+ WN +K
Sbjct: 1496 LSELEEVIDYCTLPMESPIADSRRELIRNMWNERIK 1531
>04_04_1399 -
33249210-33249359,33249521-33249597,33249735-33249814,
33249904-33250094,33250183-33250469,33250595-33250721,
33250878-33250994,33251085-33251198,33251510-33251671,
33252909-33252974,33253098-33253269,33253377-33253584,
33253728-33253776,33254132-33254305
Length = 657
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -3
Query: 519 FPDSLFRGFK-KSVILFWVLVLSGLETLASW 430
FPD FRGFK K + WV+ + L + W
Sbjct: 28 FPDDPFRGFKGKPLTTKWVMAVQYLFPILDW 58
>04_03_0316 + 14261942-14262506,14262710-14263134
Length = 329
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = +2
Query: 149 DTRSLRVRGVTALDGVRRNLFGCTDREENRRFVERELARQLELDSQRW 292
DTR R RG+ RR + GC+ R + + L+ D RW
Sbjct: 128 DTRRARPRGLHVRVRRRRGIIGCSAWPGIRLWAREQRGLHLKRDRHRW 175
>12_02_0451 -
19179592-19179648,19179745-19179879,19180214-19180247,
19180347-19180423,19180523-19180598,19180792-19180925,
19181772-19181878,19182505-19182808,19182913-19183218
Length = 409
Score = 27.9 bits (59), Expect = 5.2
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -1
Query: 335 SECPVKVVHLQNRSPIFDCPIPIVSPILSQRIF 237
S CP+ + + R F+C + SP L Q +F
Sbjct: 376 SNCPLNAIREKYRQQKFECVANLTSPELGQSLF 408
>08_02_1237 +
25475219-25475916,25476127-25476320,25476407-25477302,
25477416-25477490,25477582-25477689,25477780-25477897,
25478007-25478142,25478228-25478372,25478460-25479080,
25479166-25479597
Length = 1140
Score = 27.9 bits (59), Expect = 5.2
Identities = 20/71 (28%), Positives = 34/71 (47%)
Frame = +2
Query: 275 LDSQRWGFDFANEQPLPGIQRFAWQLVPASAVPVALRRSPITTSMPKQNTSTQEAKVSSP 454
LD Q GFD + G + Q VP++ +A+ + + TS P NTS + S
Sbjct: 368 LDKQTNGFD----KQADGFDK---QAVPSTMDLLAVLSTALATSNPDSNTSQSQGSSDSS 420
Query: 455 ESTKTQKRITD 487
+ K++ + T+
Sbjct: 421 GNNKSKSQSTE 431
>02_05_0442 - 29044736-29046604
Length = 622
Score = 27.9 bits (59), Expect = 5.2
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +2
Query: 305 ANEQPLPGIQRFAWQLVPASAVPVALRRSPI--TTSMPKQNTSTQEAKVSSPESTKT 469
A + P G ++ A P++A + SP+ TT PKQ E V+ ++T+T
Sbjct: 16 APQSPSYGRKKNASAAPPSAAASTTVLTSPLVTTTRTPKQTEQEDEQLVAKTKTTRT 72
>08_02_0731 -
20483518-20484154,20484182-20484375,20484541-20484640,
20485282-20485622
Length = 423
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +3
Query: 387 GHRSQPRCRNRIHPPRRLKFQVQRAPRPKR 476
GH +PR +HPPRR V P P+R
Sbjct: 270 GHVHRPRLSRWLHPPRRSSSPVP-PPSPRR 298
>03_06_0037 + 31222963-31223886,31225172-31225786
Length = 512
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 356 PASAVPVALRRSPITTSMPKQNTSTQEAKVSSPESTKT 469
PA+A PV L+R S+ + ++K + PE+T T
Sbjct: 170 PAAAAPVQLKRRLFELSLSVLMETIAQSKATRPETTDT 207
>03_02_0220 - 6531255-6532667
Length = 470
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +2
Query: 317 PLPGIQRFAWQLVPASAVPVALRRSPITTSMPKQNTSTQEAKVSSPE 457
PL ++ W+L P+S +P + S + S+P ++ SSP+
Sbjct: 70 PLLSLRFLLWRLPPSSPLPSSYALSSLAASLPDLPSAVPLLLSSSPQ 116
>01_01_0012 + 71903-72935,73468-73981,74619-76008
Length = 978
Score = 27.5 bits (58), Expect = 6.9
Identities = 23/65 (35%), Positives = 27/65 (41%)
Frame = +3
Query: 321 YRAFRDSRGN*YQRLQFR*R*EGHRSQPRCRNRIHPPRRLKFQVQRAPRPKRE*QIS*SP 500
YR RD G +R R R S R R+R PR K + PKR + S SP
Sbjct: 573 YRDDRDKYGRSGRRESDRSRDHYSSSSRRNRSRSISPRHKKSSRSDSRSPKRHREESLSP 632
Query: 501 GKGYR 515
K R
Sbjct: 633 SKSRR 637
>09_02_0517 + 10139859-10140245
Length = 128
Score = 27.1 bits (57), Expect = 9.1
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = +2
Query: 191 GVRRNLFGCTDREENRRFVERELARQLELDSQRWGFDFANEQPLPGIQRFAWQL 352
GV R GC D EE RR A + ++ + NE+ G +R W+L
Sbjct: 67 GVGRRRGGCDDNEEGRRRARWGSAAAVRMEDEGGEAGSDNEE---GRRRLVWRL 117
>07_01_0276 +
2028983-2029070,2030084-2030151,2030317-2031246,
2031334-2031415,2031544-2031609,2032606-2033304,
2033422-2035424,2035599-2036173,2037060-2037223,
2037306-2037365,2037475-2037839
Length = 1699
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 240 DSLRENWRDNWNWTVKDG 293
D ENWRD W + KDG
Sbjct: 175 DKESENWRDRWGDSGKDG 192
>04_04_0138 + 23067885-23068245,23068393-23068634
Length = 200
Score = 27.1 bits (57), Expect = 9.1
Identities = 17/65 (26%), Positives = 26/65 (40%)
Frame = +2
Query: 293 GFDFANEQPLPGIQRFAWQLVPASAVPVALRRSPITTSMPKQNTSTQEAKVSSPESTKTQ 472
GFD P P + + P S P +T + P+Q T + + +PE +
Sbjct: 121 GFDLGGAAPSPPVS--VPRSTPNSTAPSTPTPVTVTRAPPQQMTPSPKTSSQTPEYSSGL 178
Query: 473 KRITD 487
K I D
Sbjct: 179 KLIAD 183
>03_02_0707 + 10569261-10571276
Length = 671
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 252 ENWRDNWNWTVKDGASILQMNNLYRAFRDSRG 347
+NWR +W W + G I M Y + +D+ G
Sbjct: 260 DNWRLSWEW--RRGEFIYSMKGAYPSEKDTTG 289
>02_01_0521 +
3768072-3768239,3768280-3768337,3769197-3769659,
3769736-3769990,3770763-3770934,3772260-3772910,
3773659-3774045,3774123-3774155,3774239-3774307,
3774388-3774463,3775135-3775223,3775442-3775615,
3775693-3775821
Length = 907
Score = 27.1 bits (57), Expect = 9.1
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = +2
Query: 188 DGVRRNLFGCTDREENRRFVERELARQLELDSQRWGFDFANEQPLP 325
D V + L E+ RR ER RQLE D +RW + E+ P
Sbjct: 418 DPVDKGLMRKRIEEQRRREAERR--RQLEKDMRRWEEEEEEEEAWP 461
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,916,163
Number of Sequences: 37544
Number of extensions: 275375
Number of successful extensions: 916
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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