Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS320F06f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 0.97
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 27 2.2
SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr ... 26 3.9
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp... 26 3.9
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|... 25 5.2
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 25 6.8
SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|c... 25 6.8
SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces ... 25 9.0
SPAC227.10 |||prefoldin subunit 2 |Schizosaccharomyces pombe|chr... 25 9.0
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p... 25 9.0
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.9 bits (59), Expect = 0.97
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -1
Query: 503 RHYGSSRSNNGAFRYFKYGSP-SSPNPSLATKGSMSKLTHRHS 378
R+YG + G Y+ Y +P SS PS+ ++ + T+ +S
Sbjct: 58 RYYGRAAETGGTPTYYGYATPTSSSEPSIFSESATPSETNSYS 100
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 26.6 bits (56), Expect = 2.2
Identities = 15/54 (27%), Positives = 30/54 (55%)
Frame = -1
Query: 164 VCVSMDLFFRFIEFEIATILKKFHFKIDMIVDAFLVARGRCKRYWGRCLAVVWA 3
+CV+ D+F R I+ E I+ ++ + D++L GR R+ + LA+ ++
Sbjct: 348 ICVATDVFGRGIDIERVNIV--INYDMPDSPDSYLHRVGRAGRFGTKGLAITFS 399
>SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 450
Score = 25.8 bits (54), Expect = 3.9
Identities = 14/53 (26%), Positives = 29/53 (54%)
Frame = +1
Query: 109 IVAISNSMKRKNKSIETQTHKCIGFSRRENEIEHIRCCRSPLCATLRSIPTIV 267
+V+ SN +++++E +C + E +++ C S LCAT R++ I+
Sbjct: 359 LVSCSNCTDYQSRNLEI---RCGVKKMGDREKKYVHCLNSTLCATERALCCIL 408
>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
beta subunit Qcr1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 457
Score = 25.8 bits (54), Expect = 3.9
Identities = 19/63 (30%), Positives = 27/63 (42%)
Frame = -2
Query: 379 AHCESRITSRGFYNR*EKKVCD*LFHYTGAYIWTMFSRR*WGYYEESHKEETDNI*CVLS 200
AH + +G NR +K + F TGA++ SR YY + K N VL+
Sbjct: 65 AHFLEHLAFKGTKNR-SQKALELEFENTGAHLNAYTSREQTVYYAHAFKNAVPNAVAVLA 123
Query: 199 HSL 191
L
Sbjct: 124 DIL 126
>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -1
Query: 260 VGILRRVAQRGDRQHLMCSISFSRRLNPIHLCVCVSM 150
VG+++ + D ++ S SFSR L +HL C+ +
Sbjct: 359 VGLVKCICLT-DLSVILLSGSFSRNLERVHLSYCIGL 394
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.0 bits (52), Expect = 6.8
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -2
Query: 508 KHVITDPPDPITVLLDTSSTGH 443
+H++ +PP P+TVL GH
Sbjct: 499 RHILDNPPKPLTVLDIYFQIGH 520
>SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 169
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +1
Query: 88 LK*NFFRIVAISNSMKRKNKSIETQTHKCI 177
+K N+ I+ S ++K K K IET THK I
Sbjct: 137 IKTNYIVILLTSINLK-KLKMIETSTHKAI 165
>SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 601
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +1
Query: 412 FVASDGFGEDGD 447
+V SD FGEDGD
Sbjct: 499 YVTSDDFGEDGD 510
>SPAC227.10 |||prefoldin subunit 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 114
Score = 24.6 bits (51), Expect = 9.0
Identities = 15/60 (25%), Positives = 29/60 (48%)
Frame = +1
Query: 37 LLHRPLATRNASTIISILK*NFFRIVAISNSMKRKNKSIETQTHKCIGFSRRENEIEHIR 216
++H L R T++ ILK I N + + K +E + K +++N+I+ +R
Sbjct: 58 MIHGVLVERTVGTVVPILKTTQEGIQTAMNGLLDQYKQLEAEFQK----FQKDNKIQVVR 113
>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 601
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +1
Query: 412 FVASDGFGEDGD 447
+V SD FGEDGD
Sbjct: 499 YVTSDDFGEDGD 510
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,268,506
Number of Sequences: 5004
Number of extensions: 46147
Number of successful extensions: 98
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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