Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320F06f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0078 + 5476288-5476626,5477474-5477670,5477750-5477885,547...    28   4.0  

>03_02_0078 +
           5476288-5476626,5477474-5477670,5477750-5477885,
           5478055-5478132,5478227-5478280,5478466-5478650,
           5478781-5480374,5480506-5480700,5480753-5480904,
           5481213-5481486,5481597-5481733,5482219-5482258,
           5482773-5483261,5483605-5484168
          Length = 1477

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 266 TIVGILRRVAQRGDRQHLMCSISFSRRLNP 177
           +  G  + +AQRG ++H++ SI   R +NP
Sbjct: 324 SFTGDKQTLAQRGGKEHIVDSIKSKREINP 353


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,477,873
Number of Sequences: 37544
Number of extensions: 282804
Number of successful extensions: 621
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)