Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320F06f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125443-1|AAD12801.1|  783|Caenorhabditis elegans Hypothetical ...    29   1.5  
AC024845-1|AAF60850.2|  347|Caenorhabditis elegans Hypothetical ...    29   1.5  
Z67882-3|CAA91800.2| 1324|Caenorhabditis elegans Hypothetical pr...    28   4.7  
U80953-5|AAO61446.3|  317|Caenorhabditis elegans Dachsund transc...    28   4.7  
U80953-4|AAB52555.2|  420|Caenorhabditis elegans Dachsund transc...    28   4.7  
U50197-1|AAA91254.1|  329|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>AF125443-1|AAD12801.1|  783|Caenorhabditis elegans Hypothetical
           protein H32C10.3 protein.
          Length = 783

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = +2

Query: 275 HCPYVCSCVVE*SVTHFFFLPIVETSRSYSRFTVGYVYGLIYSSSPSLQATGSARTV 445
           HCP++  CV   ++  F F  +     +   F V YV  L+Y    S+ A+G  ++V
Sbjct: 570 HCPWIHKCVYRKNLRAFVFFCL-----TIFMFHVFYVLLLLYMIGASMNASGFGKSV 621


>AC024845-1|AAF60850.2|  347|Caenorhabditis elegans Hypothetical
           protein Y65B4BL.3 protein.
          Length = 347

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +1

Query: 283 ICMLL-CSGIVSHTLFFPTYCRNLEKLF*IHSGLCLWVNLLI 405
           IC+L+ C   +   L  PTYC +  + F   S  C W++ ++
Sbjct: 42  ICLLVYCIRSMQEHLSVPTYCTDPNESFRCSSSTCYWLHRIV 83


>Z67882-3|CAA91800.2| 1324|Caenorhabditis elegans Hypothetical protein
            F22E10.2 protein.
          Length = 1324

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
 Frame = +1

Query: 121  SNSMKRKNKSIETQTHKCIGFSRRENEIEHIRCCRSPLCATL--RSIPTI--VY*TLSIC 288
            + S KRK   +    ++ + +   +N + ++ C    L   +  +   T+   +  L   
Sbjct: 972  NESKKRKRTELRKSVYEAVNYCISQNFMYYMSCFCFALAIRIINQGDQTVDKTFRCLMAM 1031

Query: 289  MLLCSGIVSHTLFFPTY 339
            ML C GI+    FFP +
Sbjct: 1032 MLCCEGIIMSAQFFPQF 1048


>U80953-5|AAO61446.3|  317|Caenorhabditis elegans Dachsund
           transcription factor homologprotein 1, isoform b
           protein.
          Length = 317

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +1

Query: 79  ISILK*NFFRIVAISNSMKRKNKSIETQTHKCIGFSRR 192
           I +L+ +F +IV     +++K   +ETQ  KC  F +R
Sbjct: 250 IQVLRESFHKIVQEERDLRKK---LETQNKKCTAFEKR 284


>U80953-4|AAB52555.2|  420|Caenorhabditis elegans Dachsund
           transcription factor homologprotein 1, isoform a
           protein.
          Length = 420

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +1

Query: 79  ISILK*NFFRIVAISNSMKRKNKSIETQTHKCIGFSRR 192
           I +L+ +F +IV     +++K   +ETQ  KC  F +R
Sbjct: 353 IQVLRESFHKIVQEERDLRKK---LETQNKKCTAFEKR 387


>U50197-1|AAA91254.1|  329|Caenorhabditis elegans Hypothetical
           protein F25E2.1 protein.
          Length = 329

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 211 CVLSHSLAG*ILYIYVFVSLWTYF 140
           CV+ H +A  + YI+ F++   YF
Sbjct: 172 CVVEHDVAKVLFYIFAFITTLAYF 195


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,558,882
Number of Sequences: 27780
Number of extensions: 263135
Number of successful extensions: 628
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)