Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320F06f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   2.5  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              22   3.3  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    22   3.3  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   4.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   5.8  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   7.7  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 89  KIDMIVDAFLVARGRCKRYWG 27
           KID I++   V    C R WG
Sbjct: 105 KIDSIINIIRVRVDACDRLWG 125


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 6/19 (31%), Positives = 11/19 (57%)
 Frame = -3

Query: 114 NDPKEVSLQNRYDCRCISC 58
           N   E+ ++   +C+CI C
Sbjct: 122 NGVMEIKIREPVECKCIKC 140


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 6/19 (31%), Positives = 11/19 (57%)
 Frame = -3

Query: 114 NDPKEVSLQNRYDCRCISC 58
           N   E+ ++   +C+CI C
Sbjct: 122 NGVMEIKIREPVECKCIKC 140


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -2

Query: 310 LFHYTGAYIWT 278
           + HYTG  +WT
Sbjct: 126 ILHYTGKVLWT 136


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 437 SPNPSLATKGSMSKLTHRHSPL 372
           SPN ++A    M K   RH P+
Sbjct: 96  SPNSTIAVCVCMRKCPRRHRPV 117


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/20 (30%), Positives = 11/20 (55%)
 Frame = +2

Query: 266 STKHCPYVCSCVVE*SVTHF 325
           S + CPY     +  +++HF
Sbjct: 558 SEEQCPYTVDAAIYGNISHF 577


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,662
Number of Sequences: 438
Number of extensions: 3225
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)