Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320F05f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0794 - 24671955-24672362,24672469-24672505,24672804-246728...    29   1.7  
12_02_0959 + 24818310-24818369,24818689-24819136,24819265-248194...    29   2.3  
05_07_0053 - 27364449-27365021,27365117-27365352,27365993-27367880     27   6.9  
12_02_0961 - 24851687-24851962,24852134-24852405,24852521-248529...    27   9.1  

>06_03_0794 -
           24671955-24672362,24672469-24672505,24672804-24672858,
           24674044-24674167,24674670-24674903
          Length = 285

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 399 LSLVQRNGPPVLLLPLRRQIPYKGDGIEIP 488
           L+++ R GP +   PLR  IPY G G+ +P
Sbjct: 107 LAILGRPGPDIPFAPLRPVIPYNG-GVAVP 135


>12_02_0959 +
           24818310-24818369,24818689-24819136,24819265-24819482,
           24819651-24819929
          Length = 334

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -1

Query: 506 NDQQYVRYLYTVTFVRYLTSERQQEDRRTVSLN*AQPAFSLDTQIA 369
           +D ++  Y YT  F  YLT E + E    VSL    P F +  Q A
Sbjct: 190 DDDEHADYHYT-RFANYLTGEERDEIFSLVSLQPGNPVFVVVLQTA 234


>05_07_0053 - 27364449-27365021,27365117-27365352,27365993-27367880
          Length = 898

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
 Frame = +3

Query: 237 RRFTGERVAHFVVSDQRYVYVEMCIDIRDRGPNKNL--CS*IC*TKGYLCVKRKRGLSLV 410
           RRF  ER   F +   R      C+++ D G       C  +  ++  L  K +   ++V
Sbjct: 91  RRFCAEREGGFPLRLARLAADGCCLELEDDGGQVGALSCFRLSTSQSGLSRKAEMVAAVV 150

Query: 411 QRNGPPVLLLPLRRQIPYKG 470
               PPV ++ + R++P  G
Sbjct: 151 AAGSPPVRVVAVIRRLPGAG 170


>12_02_0961 -
           24851687-24851962,24852134-24852405,24852521-24852953,
           24853554-24853676,24853681-24853686
          Length = 369

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 503 DQQYVRYLYTVTFVRYLTSERQQEDRRTVSLN*AQPAF 390
           D ++  Y Y+  F  YLT E ++E    VSL    P F
Sbjct: 227 DYEHADYYYS-RFANYLTGEEREEIFSLVSLQPGNPVF 263


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,738,816
Number of Sequences: 37544
Number of extensions: 204898
Number of successful extensions: 357
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)