Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320F03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|ch...    27   2.2  
SPAC222.15 |meu13|SPAC821.01|Tat binding protein 1|Schizosacchar...    25   5.2  
SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit Rsm2...    25   5.2  
SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5 |Schizo...    25   9.0  
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac...    25   9.0  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   9.0  

>SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 401

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +1

Query: 256 WERRG-DPYVIQPSVRSQVDSDYDATAAQTLTSNANLLDSQRYTHNQHQ 399
           WERR  D + +Q S+  ++    +  A +T       ++ QR+  NQHQ
Sbjct: 170 WERRARDEHEMQESLAVRLADCEEQLARETERQEQYEVEIQRHLTNQHQ 218


>SPAC222.15 |meu13|SPAC821.01|Tat binding protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 487 VRNTD*RYMTVEHGHSHVHHRFDSLWHSVTD 395
           ++ TD  Y   + G S+    F  LWH +TD
Sbjct: 163 MQKTDKNYDFAKKGFSNRKKMFYDLWHLITD 193


>SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit
           Rsm25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 18/71 (25%), Positives = 32/71 (45%)
 Frame = +1

Query: 307 VDSDYDATAAQTLTSNANLLDSQRYTHNQHQSLNAINCQICDEHGYVRVPRSYNVNQYFE 486
           V++ YD    +     A     QR  H+Q Q+L A+  +   E GY     +  +N +F+
Sbjct: 138 VENAYDQARKEFYHLRAEQEIQQRVAHDQAQALGAVFTKSDLELGYEMDQNA--LNSWFD 195

Query: 487 RAQKHDDQQIT 519
            A ++ +   T
Sbjct: 196 NASQYAEANRT 206


>SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 411

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 6/24 (25%), Positives = 15/24 (62%)
 Frame = -2

Query: 445 HSHVHHRFDSLWHSVTDVGCACIF 374
           +S +  +F+  W+ ++ +G  C+F
Sbjct: 278 NSTIWSKFEDGWYQISKIGAQCVF 301


>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
           Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 295 VRSQVDSDYDATAAQTLTSNANLLD 369
           +R   D DYD+ A   + SN + LD
Sbjct: 403 IRVSSDKDYDSYACHEVVSNPSTLD 427


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 304 QVDSDYDATAAQTLTSNANLLDSQRYTHNQ 393
           Q+DS YDA   + + S  + +D  R  HN+
Sbjct: 260 QLDSAYDAAERRMIESGWSSVDEIRDVHNK 289


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.311    0.125    0.364 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,896,813
Number of Sequences: 5004
Number of extensions: 32534
Number of successful extensions: 79
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)