Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320F03f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0698 + 6162127-6162160,6162317-6162512,6162654-6162699           30   0.98 
06_03_1312 - 29246828-29246899,29247011-29247058,29247138-292472...    27   6.9  
05_03_0201 - 9762563-9762843,9763037-9763919,9763988-9764036,980...    27   6.9  
11_06_0727 - 26709399-26710863,26713529-26713898,26714115-26714421     27   9.1  
01_07_0137 - 41381294-41382433                                         27   9.1  

>08_01_0698 + 6162127-6162160,6162317-6162512,6162654-6162699
          Length = 91

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 10/32 (31%), Positives = 13/32 (40%)
 Frame = -2

Query: 460 TVEHGHSHVHHRFDSLWHSVTDVGCACIFVNL 365
           T   GH H HH  D  W       C C  +++
Sbjct: 58  TTSRGHHHHHHHGDGFWKGCCAALCCCCLLDM 89


>06_03_1312 -
           29246828-29246899,29247011-29247058,29247138-29247215,
           29247304-29247360,29247597-29247662,29247750-29247839,
           29248136-29248213,29248318-29248422,29248534-29248669,
           29248778-29248853,29248973-29249177,29249289-29249501,
           29250073-29250795
          Length = 648

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 268 GDPYVIQPSVRSQVDSDYDATAAQTLTSNANLLDSQ 375
           GDP  ++ +V       Y ATA  T+T + N +D+Q
Sbjct: 267 GDPSTVKSAVSGCSKIIYCATARSTITGDLNRVDNQ 302


>05_03_0201 -
           9762563-9762843,9763037-9763919,9763988-9764036,
           9806710-9807680
          Length = 727

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
 Frame = +1

Query: 301 SQVDSDYDATAAQTLTSNANLLDSQRYTHNQHQSLN----AINCQICDEHGY 444
           SQ+       A Q LT   ++  + R TH     +     +I C +CDE G+
Sbjct: 59  SQIQPQVQLEAVQALTPQVSMPPASRMTHGDVPHVGSKEASIICFMCDEQGH 110


>11_06_0727 - 26709399-26710863,26713529-26713898,26714115-26714421
          Length = 713

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 16/44 (36%), Positives = 19/44 (43%)
 Frame = +1

Query: 373 QRYTHNQHQSLNAINCQICDEHGYVRVPRSYNVNQYFERAQKHD 504
           QR   NQHQS    N Q   E G +  PR     Q  +  +K D
Sbjct: 523 QRANINQHQSKQTQNQQTNKEDGMMDTPRQTQDQQEADMKKKAD 566


>01_07_0137 - 41381294-41382433
          Length = 379

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 400 SLNAINCQICDEHGYVRVPRSYNVNQYFERAQ 495
           S+ A++ +    HGY+R  R Y V++Y ER +
Sbjct: 258 SVGAMDDEDHARHGYLRGSRRYEVSRYEEREE 289


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.311    0.125    0.364 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,561,262
Number of Sequences: 37544
Number of extensions: 190023
Number of successful extensions: 397
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)