Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS320F03f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003148-8|AAB54211.2|  346|Caenorhabditis elegans Hypothetical ...    29   2.7  
AF016437-1|AAB65884.2|  690|Caenorhabditis elegans Hypothetical ...    27   6.2  
Z81044-6|CAB02806.1|  360|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>AF003148-8|AAB54211.2|  346|Caenorhabditis elegans Hypothetical
           protein F32B5.3 protein.
          Length = 346

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +1

Query: 343 LTSNANLLDSQRYTHNQHQSLNAINCQICDEHGYVRVPRSYNV 471
           L+S+ANL D +  TH  + S+  +N  +  + GY  +  +Y V
Sbjct: 37  LSSHANLADYKVKTHKGYVSMEELNENVFQKFGYEIIRPTYPV 79


>AF016437-1|AAB65884.2|  690|Caenorhabditis elegans Hypothetical
           protein F13H6.1 protein.
          Length = 690

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 310 DSDYDATAAQTLTSNANLLDSQRYTHNQHQS 402
           +SD   T+  + TSN ++  S RY HN   S
Sbjct: 229 ESDVSVTSTSSPTSNESMHMSSRYNHNDTSS 259


>Z81044-6|CAB02806.1|  360|Caenorhabditis elegans Hypothetical
           protein C30H6.2 protein.
          Length = 360

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 481 NTD*RYMTVEHGHSHVHHRFDS-LWHSVT 398
           +TD    T  HGHSH H   D  +W++VT
Sbjct: 88  HTDLENGTSGHGHSHHHDDSDRIMWYTVT 116


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.311    0.125    0.364 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,427,534
Number of Sequences: 27780
Number of extensions: 183126
Number of successful extensions: 432
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)