Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS320F02f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 31 0.079
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 29 0.42
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S... 29 0.42
SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c... 27 1.7
SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyce... 27 2.2
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 2.2
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 3.0
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 26 3.0
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su... 26 3.9
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po... 26 3.9
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 25 5.2
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb... 25 6.8
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 25 6.8
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 25 9.0
SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces ... 25 9.0
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 25 9.0
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 31.5 bits (68), Expect = 0.079
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = +2
Query: 104 SEKEELSVSMHNAGHLFSESDSSECNCKCHYSPSDSGLTSKDTNQSITSSIGNFTMDSNT 283
S K+ S S + S SDSS+ + SDS +S D++ S +S GN D+ T
Sbjct: 266 SSKDSDSSSNSSDSEDDSSSDSSDSESESSSEDSDSTSSSSDSDSSSSSEDGNSNTDTTT 325
Score = 28.7 bits (61), Expect = 0.56
Identities = 21/69 (30%), Positives = 35/69 (50%)
Frame = +2
Query: 98 TESEKEELSVSMHNAGHLFSESDSSECNCKCHYSPSDSGLTSKDTNQSITSSIGNFTMDS 277
+ES E+ + S ++ SES S + + S S+S +SKD++ S SS S
Sbjct: 227 SESSSED-NDSSSSSSDSESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSS 285
Query: 278 NTLSAYSES 304
++ + SES
Sbjct: 286 DSSDSESES 294
Score = 26.2 bits (55), Expect = 3.0
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Frame = +2
Query: 98 TESEKEELSV-SMHNAGHLFSESDSSECNCKCHYSPSDSGLTSKDTNQSITSSIGNFTMD 274
++SE E S S ++ SES+SS + + SDS S + S + D
Sbjct: 241 SDSESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSDSESESSSEDSD 300
Query: 275 SNTLSAYSESLDMIVSYNSFDDSTLS 352
S + S+ S+S NS D+T S
Sbjct: 301 STSSSSDSDSSSSSEDGNSNTDTTTS 326
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 29.1 bits (62), Expect = 0.42
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = +2
Query: 161 SDSSECNCKCHYSPSDSGLTSKDTNQS-ITSSIGNFTMDSNTLSAYS---ESLDMIVS 322
S SS + S S TS T+ S + SSI +MDS+ +S+YS SL I+S
Sbjct: 342 SSSSSASATATSSAESSIATSPITSSSNVVSSISTSSMDSSAVSSYSVVQSSLASIIS 399
>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 971
Score = 29.1 bits (62), Expect = 0.42
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 281 TLSAYSESLDMIVSYNSFDDSTLSILQQKTAIERI 385
TL Y E +D++VS+N +S L Q T + RI
Sbjct: 812 TLDVYGELIDVVVSHNGQYESQLDRRLQSTELARI 846
>SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 579
Score = 27.1 bits (57), Expect = 1.7
Identities = 20/91 (21%), Positives = 43/91 (47%)
Frame = +2
Query: 236 QSITSSIGNFTMDSNTLSAYSESLDMIVSYNSFDDSTLSILQQKTAIERITFYVQAHSIQ 415
QS + +G ++DSNTL D++ + + IL+++ + I+ A
Sbjct: 468 QSTAAGLGPVSLDSNTLENVDVG-DLVEGHLQYRWLVAKILKERLGYDNIS---DAEIQS 523
Query: 416 INCEADEFESKNILTFHCPACNISEVDEECL 508
+ + +++ESK T++ E+++E L
Sbjct: 524 LAVQEEKYESKQ-RTYYSQKEQEEEIEQEVL 553
>SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 851
Score = 26.6 bits (56), Expect = 2.2
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = +2
Query: 167 SSECNCKCHYSPSDSGLTSKDTNQSITSSIGNFTMDSNTLSAYSESLDMIVSYNSFDD-- 340
S + N K HY + SG+ ++ T + I S+ TL +DM + Y+ +
Sbjct: 58 SKDGNTKAHYLLAGSGINAEQTWKKI-ESLSLQVRPPTTLELSFTDVDMFLKYHREKNVL 116
Query: 341 STLSILQQKTAI 376
++L L Q T I
Sbjct: 117 NSLEALVQNTQI 128
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 2.2
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = +2
Query: 197 SPSDSGLTSKDTNQSITSSIGNFTMDSNTLSAYSESLDMIVSYNSFDDSTLSIL 358
S S S T + + TSS+ + S++ S+++ S + + +SF STLSIL
Sbjct: 742 SSSSSSYTPASSTSTTTSSVSS--RQSSSSSSFTPSSAISTAKSSFVLSTLSIL 793
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.2 bits (55), Expect = 3.0
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Frame = +2
Query: 98 TESEKEELSVSMHNAGHLFSESD--SSECNCKCHYSPSDSGLTSKDTNQS--ITSSIGNF 265
+ + L+ S + L S S SS N SP+ S LTS S +SS +
Sbjct: 68 SSASSSSLTSSSAASSSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTTSS 127
Query: 266 TMDSNTLSAYSESLDMIVSYNSFDDSTLS 352
++ S+++++ S + I S + ST S
Sbjct: 128 SLASSSITSSSLASSSITSSSLASSSTTS 156
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 26.2 bits (55), Expect = 3.0
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 9/120 (7%)
Frame = +2
Query: 116 ELSVSMHNAGHLFSESDSSECNC----KCHYSPSD-SGLTSKDTNQSITSS----IGNFT 268
ELSVS + H F + +SS+ + + S SD S TS+D N+ S + NF
Sbjct: 1716 ELSVSPESDMH-FKDGNSSKLEIVESKEIYASDSDISNSTSEDINKDECVSKDIEVDNFA 1774
Query: 269 MDSNTLSAYSESLDMIVSYNSFDDSTLSILQQKTAIERITFYVQAHSIQINCEADEFESK 448
++ + S +S D + D+ S T+I+R Y + + + D ES+
Sbjct: 1775 LNLQSQSYEGDSNDFGIREVPLSDANQSSQADSTSIDRYGPY-SSQKVNFSKYKDFVESR 1833
>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 25.8 bits (54), Expect = 3.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 254 IGNFTMDSNTLSAYSESLDMIVSYNSFDDSTLSILQQ 364
I NF + N S + +D I+S+ +D SIL Q
Sbjct: 532 ISNFVLFDNYTSTLKDPIDSILSFCKLNDFQESILLQ 568
>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 875
Score = 25.8 bits (54), Expect = 3.9
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = +2
Query: 323 YNSFDDSTLSILQQKTAIERITFYVQAHSIQINCEADEFESKNILTFHCPACNISEVDEE 502
YN+ + LS + + +I R+ V +Q + +E + +NIL F SEV
Sbjct: 119 YNTLKEKLLSRVLDRESIVRLEAVVALSRLQEDTGDEENDVRNILLFLLQNDPSSEVRRS 178
Query: 503 CLL 511
LL
Sbjct: 179 VLL 181
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -3
Query: 288 DNVLESIVKFPIEEVIDWFVSFDVKPE 208
D + +S+++ +EVID F ++KPE
Sbjct: 3 DQLEDSVIETNYDEVIDTFDDMNLKPE 29
>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 933
Score = 25.0 bits (52), Expect = 6.8
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Frame = +2
Query: 65 DLREAMINLFGTESEKEELSVSMHNAGHLFSESDSSEC--------NCKCHYSPSDSGLT 220
DLRE +LFG E + + V + L ++ + E + K HY ++SG+
Sbjct: 27 DLREKSQHLFGVLLEPQ-VPVIQYGLNQLEEKARNLESKVLLTRDGDTKAHYLLAESGMN 85
Query: 221 SKDTNQSITS 250
++ T Q I S
Sbjct: 86 AEQTRQKIYS 95
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 25.0 bits (52), Expect = 6.8
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = +2
Query: 134 HNAGHLFSESDSSECNCKCHYSPSDSGLTSKDTNQSITSSIGN--FTMDSNTLSAYSESL 307
H +GH + SS + + SDS +S +++ SS N DS+T SA S S
Sbjct: 72 HTSGHASEHTSSSRSS----HDESDSMSSSSESDSDSVSSESNPKSYSDSSTSSARSSST 127
Query: 308 DMIVSYNSFDD 340
+S +DD
Sbjct: 128 SGSISL--YDD 136
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +2
Query: 143 GHLFSESDSSECNCKCHY 196
G S+S SS C CKC +
Sbjct: 1298 GDSISQSCSSGCGCKCQF 1315
>SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 343
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 83 INLFGTESEKEELSVSMHNAGHLFSESDS 169
IN FGTE KEE + + G L+ S S
Sbjct: 221 INSFGTELSKEERAKMYPSFGRLYPFSTS 249
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +2
Query: 113 EELSVSMHNAGHLFSESDSSECNC 184
EE + S+ NAG F + S C C
Sbjct: 102 EEKTQSVANAGEPFEDEGSETCRC 125
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,990,927
Number of Sequences: 5004
Number of extensions: 37883
Number of successful extensions: 133
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -