Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS320F02f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0472 - 3473096-3474288,3474833-3474938 32 0.24
07_03_1479 - 26832976-26833095,26833737-26833943,26834104-268342... 30 1.3
03_01_0614 + 4515515-4515540,4515988-4516209,4516681-4516768,451... 29 3.0
12_01_0777 - 7095081-7096259,7096636-7096725,7096827-7096902,709... 28 4.0
02_05_0078 - 25656695-25656888,25656941-25657127,25657765-256580... 28 4.0
06_03_0272 + 19053455-19053587,19054665-19056627,19056827-190568... 28 5.2
>01_01_0472 - 3473096-3474288,3474833-3474938
Length = 432
Score = 32.3 bits (70), Expect = 0.24
Identities = 18/94 (19%), Positives = 37/94 (39%)
Frame = +2
Query: 101 ESEKEELSVSMHNAGHLFSESDSSECNCKCHYSPSDSGLTSKDTNQSITSSIGNFTMDSN 280
E E ++ +H+A + C C + +G N+ + SS N
Sbjct: 193 EDELNTVNQKLHDANEKLEVLEEKSLRCHCDSKENGNGADQSAINEKLQSSQEEINNIKN 252
Query: 281 TLSAYSESLDMIVSYNSFDDSTLSILQQKTAIER 382
+L SE ++ N ++ + L+++ A +R
Sbjct: 253 SLEVLSEEHSRLLGQNKKLEAEIVNLKEEIASDR 286
>07_03_1479 - 26832976-26833095,26833737-26833943,26834104-26834252,
26834330-26834732,26834840-26835118,26835285-26835716,
26836362-26836838,26837171-26837212,26837285-26837545,
26837637-26838938,26839146-26839575,26839643-26840046,
26840360-26840716,26840842-26841102,26841494-26842141,
26842231-26842452,26842547-26842768,26842860-26843009,
26843739-26844111,26844467-26844689,26845167-26845425,
26845585-26845920,26846013-26846999,26848395-26849624,
26849706-26849768,26849858-26849910,26849998-26850079,
26850520-26850588,26851070-26851129,26851205-26851267,
26851993-26852101,26852742-26852827,26853120-26853847,
26854613-26854676
Length = 3716
Score = 29.9 bits (64), Expect = 1.3
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +2
Query: 173 ECNCKCHYSPSDSGLT--SKDTNQSITSSIGNFTMDSNTLSAYSESLDMIVSYNSFDDST 346
E NC H +DS +T + NQ+I+ + + L AY+E IV+ N F
Sbjct: 3442 EINCARHNREADSPITIFKEQLNQAISGQVSPEAVVELRLQAYNEITKNIVNDNIFSQYM 3501
Query: 347 LSIL 358
IL
Sbjct: 3502 HKIL 3505
>03_01_0614 +
4515515-4515540,4515988-4516209,4516681-4516768,
4517084-4517123,4517259-4517305,4517464-4517584,
4517931-4518091
Length = 234
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/72 (23%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +2
Query: 128 SMHNAGHLFSESDSSECNCKCHYSPSDS-GLTSKDTNQSITSSIGNFTMDSNTLSAYSES 304
S N G SD+S+ + + SP+++ G+ ++ ++S+ + D +A+ S
Sbjct: 45 SSSNVGPHQRASDNSQSSSRAQPSPAEAAGIIARLKDKSV-DELQRLLKDKEAYNAFFNS 103
Query: 305 LDMIVSYNSFDD 340
LD + + N+ D
Sbjct: 104 LDQVKTQNNLRD 115
>12_01_0777 -
7095081-7096259,7096636-7096725,7096827-7096902,
7097150-7097367,7097502-7097717,7097922-7098107,
7098181-7098303,7098399-7098514,7099254-7099832,
7101485-7101517,7102485-7103679,7103732-7103797,
7104843-7104905,7105328-7105411
Length = 1407
Score = 28.3 bits (60), Expect = 4.0
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +2
Query: 185 KCHYSPSDSGLTSKDTNQSITSS-IGNFTMDSNTLSAYSESLDMIVSYNSFDDSTLSILQ 361
+C S DS ++ + S+TSS +FT S+T S + +D+ VS D+ +LQ
Sbjct: 198 ECGDSSCDSSVSEQS---SVTSSPCTSFTAHSDTRSEDLDGVDIWVSSLDLDEEDSDLLQ 254
Query: 362 QK 367
+K
Sbjct: 255 EK 256
>02_05_0078 -
25656695-25656888,25656941-25657127,25657765-25658067,
25658152-25658296,25658376-25658613,25658694-25658904,
25659060-25659175,25659420-25659468
Length = 480
Score = 28.3 bits (60), Expect = 4.0
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = -1
Query: 350 TESSHQNYYSLLS-CLMTQNKLITYWNPS*NSRSKKLSIGLCLLTSSPSQMVNSGICNCI 174
TE+ H N LL C+ QN+++ Y NS L G + S S IC +
Sbjct: 88 TEAKHANLVRLLGCCVQRQNRILIYEYVENNSLDNALQ-GSAAGVTDLSWSTRSDICMGV 146
Query: 173 QRNLTH*IGDQH 138
+ L++ + ++H
Sbjct: 147 AKGLSY-LHEEH 157
>06_03_0272 +
19053455-19053587,19054665-19056627,19056827-19056887,
19056975-19057198,19057573-19057642,19058453-19058515
Length = 837
Score = 27.9 bits (59), Expect = 5.2
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +2
Query: 95 GTESEKEELSVSMHNAGHLFSESDSSECNCKCHYSPS-DSGLTSKDTNQSITSSI 256
GT+SE S + + ++ S S + +C +SPS DSG S+ T+ +I
Sbjct: 540 GTDSENTPQSRDLPSEANVISHVPSLPHHDRCGFSPSEDSGKGSRSTHSEHEKAI 594
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,800,808
Number of Sequences: 37544
Number of extensions: 208969
Number of successful extensions: 539
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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